Skip to content
Synteny Mapping and Analysis Program
Java HTML Other
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
doc
java
LICENSE
README.md
ext.tar.gz
symap
symap.config

README.md

Download SyMAP package: www.agcol.arizona.edu/software/symap or from this site.

Documentation: www.agcol.arizona.edu/software/symap. It is also available in the /doc directory for local viewing.

Reference:
C. Soderlund, M. Bomhoff, and W. Nelson (2011) SyMAP v3.4: a turnkey synteny system with application to plant genomes. Nucleic Acids Research 39(10):e68C. Link.
C. Soderlund, W. Nelson, A. Shoemaker and A. Paterson (2006) SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Research 16:1159-1168. Link.

Description: SyMAP (Synteny Mapping and Analysis Program) is a software package for detecting, displaying, and querying syntenic relationships between sequenced chromosomes and/or FPC physical maps. It is designed for medium-to-high divergent eukaryotic genomes (not bacteria). It can align a draft genome to a fully sequenced genome, but not draft-to-draft.

Requirements: Java v1.7 or later and MySQL. SyMAP uses MUMmer for the sequence to sequence alignment, which requires Perl. SyMAP has been tested on Linux and MacOSX.

SyMAP package: The SyMAP package contains the jar files, external packages and demo files.

SyMAP github code: This site contains all necessary external classes and packages. To install, see SyMAP/java/README.

You can’t perform that action at this time.