changes for parallel and non parallel pointings

.github/install.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+echo "Using conda"
+source $CONDA/etc/profile.d/conda.sh
+conda config --set always_yes yes --set changeps1 no
+conda update -q conda  # get latest conda version
+# Useful for debugging any issues with conda
+conda info -a
+
+sed -i -e "s/- python=.*/- python=$PYTHON_VERSION/g" environment.yml
+conda install -c conda-forge mamba
+mamba env create -n protopipe --file environment.yml
+conda activate protopipe

.github/release-drafter.yml

@@ -0,0 +1,36 @@
+categories:
+  - title: '🚀 General features'
+    labels:
+      - 'enhancement'
+  - title: '🔭 Pipeline applications'
+    labels:
+      - 'pipeline applications'
+  - title: '🌐 GRID support'
+    labels:
+      - 'grid'
+  - title: '🐛 Bug Fixes'
+    labels:
+      - 'bug'
+      - 'wrong behaviour'
+      - 'fix'
+  - title: '🧰 Maintenance'
+    labels:
+      - 'maintenance'
+      - 'documentation'
+change-template: '- $TITLE (#$NUMBER) @$AUTHOR'
+change-title-escapes: '\<*_&' # You can add # and @ to disable mentions, and add ` to disable code blocks.
+template: |
+
+  ## Summary
+
+  ...
+
+  ## Contributors
+
+  $CONTRIBUTORS
+
+  ## What is changed since $PREVIOUS_TAG
+
+  Pull-requests containing changes of multiple nature are repeated.
+
+  $CHANGES

.github/workflows/ci.yml

@@ -0,0 +1,71 @@
+name: CI
+
+on: [push, pull_request]
+
+env:
+  MPLBACKEND: Agg
+  PYTEST_ADDOPTS: --color=yes
+
+jobs:
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.7, 3.8]
+        install-method: ["conda"]
+
+    steps:
+      - uses: actions/checkout@v2
+        with:
+            fetch-depth: 0
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        env:
+          INSTALL_METHOD: ${{ matrix.install-method }}
+          PYTHON_VERSION: ${{ matrix.python-version }}
+        run: |
+          source .github/install.sh
+          python --version
+          pip install codecov pytest-cov
+          pip install -e .[tests]
+          pip freeze
+      - name: Tests
+        env:
+          INSTALL_METHOD: ${{ matrix.install-method }}
+        run: |
+          source $CONDA/etc/profile.d/conda.sh
+          conda activate protopipe
+          conda list
+          ctapipe-info --version
+          pytest --cov=protopipe --cov-report=xml
+      - uses: codecov/codecov-action@v1
+
+  docs:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+        with:
+            fetch-depth: 0
+
+      - uses: ammaraskar/sphinx-action@master
+        with:
+          docs-folder: "docs/"
+          pre-build-command: |
+            apt update --yes && apt install --yes git build-essential pandoc
+            pip install -U pip setuptools wheel
+            pip install --use-feature=2020-resolver -e .[docs]
+      - name: Deploy to github pages
+        # only run on push to master
+        if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' }}
+        uses: JamesIves/github-pages-deploy-action@3.7.1
+        with:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          BRANCH: gh-pages
+          FOLDER: docs/_build/html
+          CLEAN: true
+          SINGLE_COMMIT: true

.github/workflows/deploy.yml

@@ -0,0 +1,32 @@
+name: CD
+
+on:
+  push:
+    tags:
+      - 'v*'
+
+jobs:
+  deployment:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+
+      # make sure we have version info
+        with:
+            fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: Install dependencies
+        run: |
+          python --version
+          pip install -U pip setuptools wheel
+          python setup.py sdist
+      - name: Publish package
+        uses: pypa/gh-action-pypi-publish@master
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/release-drafter.yml

@@ -0,0 +1,16 @@
+name: Release Drafter
+
+on:
+  push:
+    # branches to consider in the event; optional, defaults to all
+    branches:
+      - master
+
+jobs:
+  update_release_draft:
+    runs-on: ubuntu-latest
+    steps:
+      # Drafts your next Release notes as Pull Requests are merged into "master"
+      - uses: release-drafter/release-drafter@v5.12.1
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.gitignore

@@ -1,14 +1,18 @@
 .pytest_cache
 
+.DS_Store
+
 # Compiled files
 *.py[co]
+*.pyc
 *.a
 *.o
 *.so
 __pycache__
 
 # ignore version cache file (generated automatically when setup.py is run)
-ctapipe/_version_cache.py
+protopipe/_version_cache.py
+protopipe/_version.py
 
 # Ignore .c files by default to avoid including generated code. If you want to
 # add a non-generated .c extension, use `git add -f filename.c`.
@@ -24,10 +28,8 @@ MANIFEST
 docs/api
 docs/_build
 
-# Benchmarks
-benchmarks/DL1/plots*
-benchmarks/DL2/plots*
-benchmarks/DL3/plots*
+# Benchmark plots
+plots/
 
 # Eclipse editor project files
 .project

.mailmap

@@ -0,0 +1,12 @@
+Michele Peresano <michele.peresano@cea.fr> Michele Peresano <michele.peresano@.cea.fr>
+Michele Peresano <michele.peresano@cea.fr> Michele Peresano <peresano.michele@gmail.com>
+Julien Lefaucheur <julien.lefaucheur@obspm.fr>
+Thierry Stolarczyk <thierry.stolarczyk@cea.fr>
+Gaia Verna <verna@cppm.in2p3.fr> gaia-verna <51763341+gaia-verna@users.noreply.github.com>
+Gaia Verna <verna@cppm.in2p3.fr> gaia-verna <gverna94@gmail.com>
+Gaia Verna <verna@cppm.in2p3.fr> gaia-verna <verna@cppm.in2p3.fr>
+David Landriu <landriu@sapcta.extra.cea.fr>
+Karl Kosack <karl.kosack@cea.fr> Karl Kosack <kosack@users.noreply.github.com>
+Thomas Vuillaume <thomas.vuillaume@gmail.com> vuillaut <thomas.vuillaume@gmail.com>
+Alice Donini <alice.donini@ts.infn.it>
+Enrique Garcia <garcia@lapp.in2p3.fr>

.prospector.yaml

@@ -0,0 +1,7 @@
+pep257:
+  disable:
+    - D104
+    - D201
+    - D202
+    - D211
+    - D213

.readthedocs.yml

@@ -0,0 +1,17 @@
+version: 2
+
+python:
+  version: 3.7
+  install:
+    - method: pip
+      path: .
+      extra_requirements:
+        - docs
+    - method: setuptools
+      path: .
+  system_packages: true
+
+sphinx:
+  builder: html
+  configuration: docs/conf.py
+  fail_on_warning: true

.zenodo.json

@@ -0,0 +1,68 @@
+{
+    "title" : "protopipe",
+    "description": "Pipeline prototype for the Cherenkov Telescope Array (CTA).",
+    "license":  {
+      "id": "CECILL-B"
+    },
+    "keywords": [
+      "gamma-ray astronomy",
+      "Imaging Atmospheric Cherenkov Telescope",
+      "IACT",
+      "CTA",
+      "pipeline",
+      "simulations",
+      "grid"
+    ],
+    "upload_type": "software",
+    "creators": [
+      {
+        "orcid": "0000-0002-7537-7334",
+        "affiliation": "AIM, CEA, CNRS, Universite Paris-Saclay, Universite Paris Diderot, Sorbonne Paris Cite, F-91191 Gif-sur-Yvette, France",
+        "name": "Peresano, Michele"
+      }
+    ],
+    "access_right": "open",
+    "contributors": [
+        {
+          "type": "Other",
+          "name": "Lefaucheur, Julien"
+        },
+        {
+          "affiliation": "Aix Marseille Univ, CNRS/IN2P3, CPPM, Marseille, France",
+          "type": "Other",
+          "name": "Verna, Gaia"
+        },
+        {
+          "affiliation": "AIM, CEA, CNRS, Universite Paris-Saclay, Universite Paris Diderot, Sorbonne Paris Cite, F-91191 Gif-sur-Yvette, France",
+          "type": "Other",
+          "name": "Stolarczyk, Thierry"
+        },
+        {
+          "orcid": "0000-0002-5686-2078",
+          "affiliation": "Laboratoire d'Annecy de Physique des Particules, Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LAPP, 74000 Annecy, France",
+          "type": "Other",
+          "name": "Vuillaume, Thomas"
+        },
+        {
+          "affiliation": "AIM, CEA, CNRS, Universite Paris-Saclay, Universite Paris Diderot, Sorbonne Paris Cite, F-91191 Gif-sur-Yvette, France",
+          "type": "Other",
+          "name": "Kosack, Karl"
+        },
+        {
+          "affiliation": "Universit\u00e0 di Udine & INFN Trieste",
+          "type": "Other",
+          "name": "Donini, Alice"
+        },
+        {
+          "orcid": "0000-0003-2224-4594",
+          "affiliation": "Laboratoire d'Annecy de Physique des Particules, Univ. Grenoble Alpes, Univ. Savoie Mont Blanc, CNRS, LAPP, 74000 Annecy, France",
+          "type": "Other",
+          "name": "Garcia, Enrique"
+        },
+        {
+          "affiliation": "AIM, CEA, CNRS, Universite Paris-Saclay, Universite Paris Diderot, Sorbonne Paris Cite, F-91191 Gif-sur-Yvette, France",
+          "type": "Other",
+          "name": "Landriu, David"
+        }
+    ]
+  }