nsockg

A simple script to build a large knowledge graph with biomedical relationships. Rebuild any time with tox using the following commands in your shell:

$ git clone https://github.com/cthoyt/nsockg.git
$ cd nsockg
$ pip install tox
$ tox

This script follows the Bio2BEL philosophy of completely automating data acquisition, storage, processing, and output of biological data sources. It is based on several tools:

1. bioversions for automated discovery of new versions of data
2. pystow for automated downloading and caching of data
3. zenodo-client for automated uploading of the results to Zenodo, including automated versioning

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