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Modify all Singularity def files
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boulund committed Nov 15, 2021
1 parent 34ea88c commit 16db741
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Showing 5 changed files with 11 additions and 3 deletions.
3 changes: 2 additions & 1 deletion envs/Singularity.amrplusplus
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Expand Up @@ -52,4 +52,5 @@ From: debian:jessie-slim

%labels
Author meglab-metagenomics
version amrplusplus_v2
version amrplusplus_v2-StaG-mwc

2 changes: 1 addition & 1 deletion envs/Singularity.assembly
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Expand Up @@ -13,7 +13,7 @@ From: continuumio/miniconda3

%labels
AUTHOR boulund
VERSION 1.0
VERSION 1.1
CONDA_ENV /opt/conda/envs/assembly

%environment
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3 changes: 3 additions & 0 deletions envs/Singularity.biobakery
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@@ -1,6 +1,9 @@
Bootstrap: docker
From: continuumio/miniconda3

%labels
AUTHOR ctmrbio
VERSION 1.0

%post
### Sets correct channels and installs metaphlan3, humann3, strainphlan3 and krona
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4 changes: 4 additions & 0 deletions envs/Singularity.snakemake
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Bootstrap: docker
From: continuumio/miniconda3

%labels
AUTHOR ctmrbio
VERSION 1.0

%help
This image contains Snakemake and conda, the purpose of this image is to run StaG on a system where Snakemake is not available.
The pipeline can only be executed with the "--use-conda" directive through this image.
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2 changes: 1 addition & 1 deletion envs/Singularity.stag-mwc
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Expand Up @@ -17,7 +17,7 @@ From: continuumio/miniconda3

%labels
AUTHOR boulund
VERSION 1.0
VERSION 1.1
CONDA_ENV /opt/conda/envs/stag-mwc-main
KRAKEN2_BUILD SOURCE_v2.0.8-beta

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