RUN-ONCO: A Highly Extensible Software Platform for Cancer Precision Medicine

RUN-ONCO is a software platform for cancer precision medicine with integrated clinical records, biospecimens, and -omics data. The platform has been designed to be highly extensible plugins for both visualizations and analysis methods to help developers easily integrate a variety of third-party plugins. RUN-ONCO mainly focuses on supporting cancer center in hospitals and laboratories that allows users to customize and build their own system.

Requirements

• Install Docker and Docker Compose.

Installation

• Clone this repository to create a local copy on your computer.

• Open a terminal and cd to docker-and-compose folder in which docker-compose.yml is saved and run:

   source env.sh && sudo docker-compose up --build -d

  Optional: Stop the Docker container

   docker-compose down -v

Usage

After the successful installation you can access the web application via http://localhost:6002. The default login information for a RUN-ONCO is:

• Username: icbbe
• Password: demo2019

Live website

• The RUN-ONCO is located at http://cucpbioinfo.cp.eng.chula.ac.th:6002.