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refactor: styler & linter #220

refactor: styler & linter

refactor: styler & linter #220

Triggered via pull request July 19, 2023 10:38
@currocamcurrocam
synchronize #28
dev
Status Failure
Total duration 59m 28s
Artifacts

check-bioc.yml

on: pull_request
Matrix: build-check
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10 errors and 26 warnings
macOS-latest (4.1)
--- re-building ‘HMMERutils.Rmd’ using rmarkdown
macOS-latest (4.1)
processing vignette 'HMMERutils.Rmd' failed with diagnostics:
macOS-latest (4.1)
Vignette re-building failed.
macOS-latest (4.1)
Failed to install 'HMMERutils' from local:
macOS-latest (4.1)
Process completed with exit code 1.
windows-latest (4.1)
processing vignette 'HMMERutils.Rmd' failed with diagnostics:
windows-latest (4.1)
Vignette re-building failed.
windows-latest (4.1)
Failed to install 'HMMERutils' from local:
windows-latest (4.1)
Process completed with exit code 1.
ubuntu-latest (4.1)
Process completed with exit code 1.
macOS-latest (4.1)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
macOS-latest (4.1)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (4.1)
Unused dummy argument ‘itry’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.1)
Unused variable ‘t4’ declared at (1) [-Wunused-variable]
macOS-latest (4.1)
Unused variable ‘t5’ declared at (1) [-Wunused-variable]
macOS-latest (4.1)
‘i2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
macOS-latest (4.1)
Unused dummy argument ‘a’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.1)
Unused variable ‘i’ declared at (1) [-Wunused-variable]
macOS-latest (4.1)
Unused dummy argument ‘idigit’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.1)
Unused dummy argument ‘ifmt’ at (1) [-Wunused-dummy-argument]
macOS-latest (4.1)
Unused variable ‘j’ declared at (1) [-Wunused-variable]
macOS-latest (4.1)
Unused variable ‘k1’ declared at (1) [-Wunused-variable]
windows-latest (4.1)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
windows-latest (4.1)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (4.1)
cannot remove prior installation of package 'boot'
windows-latest (4.1)
restored 'boot'
windows-latest (4.1)
cannot remove prior installation of package 'cluster'
windows-latest (4.1)
restored 'cluster'
windows-latest (4.1)
cannot remove prior installation of package 'codetools'
windows-latest (4.1)
restored 'codetools'
windows-latest (4.1)
cannot remove prior installation of package 'foreign'
windows-latest (4.1)
restored 'foreign'
windows-latest (4.1)
cannot remove prior installation of package 'lattice'
windows-latest (4.1)
restored 'lattice'
ubuntu-latest (4.1)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
ubuntu-latest (4.1)
No files were found with the provided path: check. No artifacts will be uploaded.