Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[BUG] Incorrect parsing of the trim_primers_3end parameter #64

Closed
gregdenay opened this issue Aug 17, 2023 · 0 comments · Fixed by #65
Closed

[BUG] Incorrect parsing of the trim_primers_3end parameter #64

gregdenay opened this issue Aug 17, 2023 · 0 comments · Fixed by #65
Labels
bug Something isn't working high priority Should be done asap

Comments

@gregdenay
Copy link
Member

Version

Foodme Version: 1.6.5
OS : Debian buster
Snakemake version: 7.25.0

Bug report

What happened: The above mentionned parameter is parsed as a boolean (True/False) but the cutadapt shell block expects it as false resulting in the rule always defaulting to trimming on both ends.

What I expected to happen: False should be evaluated as False

Logs

Additional context
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug Something isn't working high priority Should be done asap
Projects
None yet
Milestone
No milestone
1 participant
@gregdenay