LXY

A command-line tool for application of contact genomic data to the problems of genome scaffolding, phasing, and clustering.

Features

• Genome Scaffolding: Scaffolding of genomes is performed, leveraging Hi-C contact genomic sequence data
• Haplotype Phasing: Uses Hi-C data to reconstruct long-distance haplotypes
• High Performance: A hybrid of python and Go to enable fast, concurrent processing

Getting Started

Please refer to the Getting Started page of the Wiki for guidance on setting up and using LXY on your system(s).