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cytoscape_PP.pl
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cytoscape_PP.pl
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#!/usr/bin/perl
################################################################################
# cytoscape_PP.pl
################################################################################
#
# Create a tab-separated posterior probability file from a comma-separated file.
# Includes the square root of the PP for more accurate visualization in
# Cytoscape.
#
# Copyright 2014 Chris Whidden
# cwhidden@fhcrc.org
# May 2, 2014
# Version 1.0
#
# This file is part of sprspace.
#
# sprspace is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
# sprspace is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with sprspace. If not, see <http://www.gnu.org/licenses/>.
################################################################################
print "ID\tPP\tsqrt(PP)\n";
my $i = 0;
while(<>) {
chomp;
my @row = split(",");
print "$i\t", $row[1], "\t", sqrt($row[1]), "\n";
$i++;
}