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Add CMAP options to annotate #73

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merged 8 commits into from
Apr 8, 2020

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@gwaybio gwaybio commented Mar 4, 2020

Specific columns are generated when annotating cell painting profiles from a Connectivity Map (CMAP) experiment. I add these columns and specific options here.

The motivating reason behind this addition is broadinstitute/lincs-cell-painting#4

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codecov-io commented Mar 12, 2020

Codecov Report

Merging #73 into master will decrease coverage by 1.01%.
The diff coverage is 9.52%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master      #73      +/-   ##
==========================================
- Coverage   97.38%   96.36%   -1.02%     
==========================================
  Files          40       40              
  Lines        1795     1816      +21     
==========================================
+ Hits         1748     1750       +2     
- Misses         47       66      +19     
Impacted Files Coverage Δ
pycytominer/annotate.py 34.14% <9.52%> (-25.86%) ⬇️

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@gwaybio gwaybio changed the title [WIP] Add CMAP options to annotate Add CMAP options to annotate Apr 8, 2020
@gwaybio gwaybio merged commit dd064c2 into cytomining:master Apr 8, 2020
@gwaybio gwaybio deleted the broad-sample-annotate branch April 8, 2020 19:22
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2 participants