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Cytoscape User Manual

The Cytoscape User Manual copyright is owned by The Cytoscape Consortium, and is made available under the same GPL license as Cytoscape itself: LGPL 2.1, the GNU Lesser General Public License, version 2.1, February 1999 available in text at http://www.gnu.org/licenses/lgpl-2.1.html.

Copyright (c) 2001-2017 The Cytoscape Consortium

Table of Contents

Introduction Launching_Cytoscape Command_Line_Arguments Quick_Tour_of_Cytoscape Creating_Networks Nested_Networks Supported_Network_File_Formats Node_and_Edge_Column_Data Column_Data_Functions_and_Equations Finding_and_Filtering_Nodes_and_Edges Navigation_and_Layout Styles Annotations App_Manager Command_Tool Merge Network_Analyzer Cytoscape_Preferences Linkout Panels Rendering_Engine Export_Your_Data Cytoscape_and_OpenCL_GPU Cytoscape.js_and_Cytoscape Programmatic_Access_to_Cytoscape_Features_Scripting Cytoscape_Privacy_Policy Basic_Expression_Analysis_Tutorial