Napari plugin for bounding box annotations
Object detection using Faster RCNN, SSD
Compute and compare MinHash signatures for DNA data sets.
Learn morphological states of dynamic cells
A GitHub action for initializing a Python project and caching dependencies
A framework for using variational inference to model drug response and scRNAseq. Work in progress.
A collection of code that will be used during the nVidia POC
Tabula Muris Senis
A collection of scripts for common data management and processing tasks
A collection of motor classes and utilities in Python 3.
Tools for crowd-sourced annotation of FISH images
Scripts for sequencing automation
Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.
common scripts/commands for the special ops team
U-Net segmentation/regression/classification in 2/2.5/3D, designed for microscopy image data.
Evaluate Bowtie2 species impact for reads mapping
serological measurements from multiplexed ELISA assays
Contains docker images and scripts to perform upstream bioinformatic analysis for CZ Biohub Microbiome Initiative samples.
Microbiome - Integrated Gut Genome
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
Public read-only repo for the OpenCell database and web app
Croissants & Coding is a beginner-friendly, safe place to learn programming, from “know-nothing” beginners to seasoned developers
Public repo for OpenCell microscopy automation scripts
Test data to be used for automated testing with the nf-core pipelines