GitHub is home to over 31 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.
Pipeline for variant calling from single-cell RNA-seq data
Assemble and annotate Ixodes Scapularis genome
The CZ Biohub Data Sciences Blog
Contains docker images and scripts to perform upstream bioinformatic analysis for CZ Biohub Microbiome Initiative samples.
Imaging database and storage
Tools for automated design of CRISPR guides for DASH, FLASH and CRISPR tagging experiments.
Tools for crowd-sourced annotation of FISH images
Dashboard for visualizing sequencing QC of plates from a single cell RNA-seq project
A DSL for data-driven computational pipelines
common scripts/commands for the special ops team
Misc work for biohub projects
Scripts for sequencing automation
A collection of scripts for common data management and processing tasks
Computational tools for identifying CRISPR targets and offtargets.
Calculate kmer signatures for samples
Web app for CRISPR experiment setup and analysis
Code and annotations for the Tabula Muris single-cell transcriptomic dataset.
Python utility scripts for working with reflow workflows. "Aguamenti" is a spell in Harry Potter that creates water out of nothing.
Cupcakes & Coding is a safe place to talk about your programming struggles
Random config / README scripts for scRNA-seq analysis.
Repository for Biohub packer images
Commonly used bioinformatics pipelines written in Reflow.
Detect fusion transcripts from RNA