midas2 v1.0.9

[qinghong2019]

after download the v1.0.9 source code, and get into the directory
conda env create -n midas2 -f midas2.yml
return error message:
Retrieving notices: ...working... done
Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound:

• midas2=1.0.9

[zhaoc1]

Hi,

I updated the midas2.yml, so please re-download the source code and re-install.

However, I recommend you refer to #121 , and install MIDAS2 via conda install:

conda config --set channel_priority flexible
conda install -c zhaoc1 -c conda-forge -c bioconda-c anaconda -c defaults midas2

Thanks!
Chunyu

[qinghong2019]

Hi, Chunyu I redownloaded, the same error message: Collecting package metadata (repodata.json): done Solving environment: failed ResolvePackageNotFound: - midas2=1.1.0. I tried: conda config --set channel_priority flexible conda install -c zhaoc1 -c conda-forge -c bioconda-c anaconda -c defaults midas2 it returns: usage: conda [-h] [-V] command ... conda: error: unrecognized arguments: midas2 Thank you! Qinghong

…

On Fri, Oct 27, 2023 at 2:27 PM Chunyu Zhao ***@***.***> wrote: Hi, I updated the midas2.yml, so please re-download the source code and re-install. However, I recommend you refer to #121 <#121> , and install MIDAS2 via conda install: conda config --set channel_priority flexible conda install -c zhaoc1 -c conda-forge -c bioconda-c anaconda -c defaults midas2 Thanks! Chunyu — Reply to this email directly, view it on GitHub <#122 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AMIMP5ZG7SCZYOPUDEPTZATYBQDIFAVCNFSM6AAAAAA6TIGDXSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTOOBTGQYDGMBUGU> . You are receiving this because you authored the thread.Message ID: ***@***.***>

[zhaoc1]

Apology for the confusion. I again updated the midas2.yml and just tested install from source on a linux server.

1. please install the v1.1.0 midas2, which is the current master branch of https://github.com/czbiohub/MIDAS2.git
2. Updated commands (just about the version):

git clone git clone https://github.com/czbiohub/MIDAS2.git
cd MIDAS2

conda env create -n midas2v1.1.0 -f midas2.yml
conda activate midas2v1.1.0 

pip install .

Thanks.
Chunyu

[qinghong2019]

it worked now. Thank you for the quick response and help

[zhaoc1]

You are welcome :)