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TIFF UAPI TODOs
documentation
Improvements or additions to documentation
μManager
Micro-Manager files and metadata
CLI to update metadata of zarr stores
enhancement
New feature or request
NGFF
OME-NGFF (OME-Zarr format)
Add tests for converting OpenCell datasets
CI
Continuous integration
#199
opened Oct 25, 2023 by
ieivanov
iohub appending does not change or raise warning regarding datatype
NGFF
OME-NGFF (OME-Zarr format)
question
Further information is requested
#187
opened Sep 11, 2023 by
edyoshikun
iohub rechunk CLI
enhancement
New feature or request
NGFF
OME-NGFF (OME-Zarr format)
#184
opened Sep 1, 2023 by
mattersoflight
iohub info
fails on MM datasets without xy_pixel_size
bug
3
Single-page TIFF converter regression?
bug
Something isn't working
maintenance
Maintenance work
μManager
Micro-Manager files and metadata
Test with a real HCS OME-TIFF dataset
CI
Continuous integration
μManager
Micro-Manager files and metadata
#163
opened Jul 24, 2023 by
ziw-liu
Save grayscale data and binary masks in the OME-zarr store
enhancement
New feature or request
NGFF
OME-NGFF (OME-Zarr format)
#156
opened Jun 28, 2023 by
nbathreya
The MicromanagerOmeTiffReader needs better definitions or documentation for position attributes
documentation
Improvements or additions to documentation
enhancement
New feature or request
μManager
Micro-Manager files and metadata
The MicromanagerOmeTiffReader needs methods to retrieve the image plane metadata
enhancement
New feature or request
μManager
Micro-Manager files and metadata
Test on NDTIFFv3 datasets
CI
Continuous integration
μManager
Micro-Manager files and metadata
#149
opened Jun 20, 2023 by
ziw-liu
Contrast limit should follow the datatype of the dataset
bug
Something isn't working
good first issue
Good for newcomers
NGFF
OME-NGFF (OME-Zarr format)
#117
opened Apr 19, 2023 by
edyoshikun
Add code coverage check on PRs
CI
Continuous integration
good first issue
Good for newcomers
meta
About how we organize the project
#115
opened Apr 17, 2023 by
ziw-liu
Can New feature or request
μManager
Micro-Manager files and metadata
convert
pass the most important information from micromanager image plane metadata?
enhancement
#103
opened Apr 5, 2023 by
talonchandler
Refactor New feature or request
μManager
Micro-Manager files and metadata
_set_mm_meta
in BaseReader
and its children
enhancement
Performance comparison between tifffile and iohub's custom OME-TIFF implementation
μManager
Micro-Manager files and metadata
performance
Speed and memory usage of the code
#66
opened Feb 22, 2023 by
ziw-liu
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