Figures for the paper Validation and tuning of in situ transcriptomics image processing workflows with crowdsourced annotations
This repository is owned by the Bioengineering Platform.
Install the instapipeline package, which can be found here along with installation instructions: https://github.com/czbiohub/instapipeline.
Main dependencies:
pip3 install ipython matplotlib numpy pandas scikit-image scikit-learn scipy starfish
A requirements.txt file is included with the exact versions the paper figures were generated with for reproducibility.
pip3 install -r reproduce_paper_environment.txt