reorganize repo and run all plates in cp pipelines

d33bs · Jan 26, 2023 · b3bce04 · b3bce04
1 parent 347c191
commit b3bce04
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diff --git a/.gitignore b/.gitignore
@@ -36,7 +36,3 @@ example_code.ipynb
 
 # ignore deprecated notebooks
 5_analyze_data/notebooks/UMAP_analysis/deprecated_notebooks
-
-# ignore cellpose plugin output and pipeline due to barrier to complete rest of analysis
-CellProfiler_pipelines/Analysis_Output/Plate1_Output/NF1_data_pybasic_cellpose_plate1.sqlite
-CellProfiler_pipelines/Pipelines/NF1_analysis_cp_plugin.cpproj
diff --git a/4_processing_features/4.extract_sc_features.sh b/4_processing_features/4.extract_sc_features.sh