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v2.0.0 #166

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wants to merge 57 commits into from
Closed

v2.0.0 #166

wants to merge 57 commits into from

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nightwnvol
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@nightwnvol nightwnvol commented Jul 26, 2023 •
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Changed

  • multithreading 🚀
  • new NODDI maps name
    • from ICVF to NDI
    • from OD to ODI
    • from FISO to FWF
  • default ndirs=500
  • default study_path='.' and subject='.' in core.Evaluation()
  • expire the deprecated ndirs parameter in core.setup()
  • replace tqdm with dicelib.ui.ProgressBar()

Added

  • modulated NODDI maps for Tissue-Weighted Mean
  • BLAS_n_threads config
  • doComputeRMSE config
  • DTI_fit_method config

Fixed

  • DeprecationWarning: dipy.reconst.shm.real_sym_sh_basis (with dipy>=1.4.0)

@nightwnvol
refactor(models, lut): rename modules
63faaf9
@nightwnvol
perf(lut): implement the dir_to_lut_idx() method in Cython
6eab9a0
@nightwnvol
perf(models): implement fit() methods in Cython
f5cd045
@nightwnvol
feat(util): add a loader-like context manager
39a148b
@nightwnvol
refactor(core): rewrite the fit() method
42830c6
@nightwnvol
feat(models, core): add the RMSE image
362f944
@nightwnvol
feat(models, core): add modulated maps for the NODDI model
f488f4b
@nightwnvol
change(models): modify the NODDI maps name
be71980
@nightwnvol
change(core): modify the output images name casing
9334917
@nightwnvol
change(core): modify some configs
c85d775
@nightwnvol
style: cleanup code
b0b7c46
@nightwnvol
change(core): modify some default configs
43a3c15
@nightwnvol
chore: get the package version with 'importlib'
be6119d
@nightwnvol
change(models): import solvers from 'cyspams'
d04a02d
@nightwnvol
build: store metadata in pyproject.toml (PEP621)
ad3089d
@nightwnvol
build: update dependencies
4d4637c
@nightwnvol
docs: update CHANGELOG.md
e6be190
@nightwnvol
fix(models): change non-implemented 'fit()' arguments
11dd148
@nightwnvol
style(models): refactor comments
294d9aa
@nightwnvol
refactor(models, core): modify the return of the 'fit()' method
f031b15
@nightwnvol
refactor(models, core): rewrite the 'set_solver()' method
454d48a
@nightwnvol
fix(core): ignore non-extisting solver params
bbaa180
@nightwnvol
fix(lut, util): replace expired numpy aliases
a0ab4e8
@nightwnvol
docs: update
cb3976e
@nightwnvol
refactor(synthesis): minor changes
9a1f2a5
@nightwnvol
build: update dependencies
60cc15e
@nightwnvol
docs: update CHANGELOG.md
98ceb12
@nightwnvol
Merge branch 'master' into 2.0.0
98c0428
@nightwnvol
refactor: replace joblib with ThreadPoolExecutor
90ac6d9
@nightwnvol
feat: add wip models support
f9523b2
@nightwnvol nightwnvol self-assigned this Jul 26, 2023
@nightwnvol nightwnvol requested a review from daducci July 26, 2023 16:24
@nightwnvol nightwnvol closed this Sep 12, 2023
@nightwnvol nightwnvol deleted the 2.0.0 branch September 12, 2023 11:14
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