ONT Genomics

Oxford nanopore project for working with WGS of fungi

Aim of project

Investigating the feasibility and quality of genome assemblies and taxonomic classification using Nanopore sequencing.

##Links to useful tools:

Genome assembly, QC and QA

ONT-Assembly-Polish Assembly and polishing with Illumina reads
https://github.com/nanoporetech/ont-assembly-polish

Katuali Assembly & polishing with Nanopore data only
https://github.com/nanoporetech/katuali

Tapestry: Assessment of genome assemblies using long read sequencing
https://github.com/johnomics/tapestry

Extraction of regions of interest

Taxonomic classification