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Wrapper for Aaron Quinlan's BEDtools, plus other useful methods for working with BED files | ||
Wrapper for Aaron Quinlan's BEDtools, plus other useful methods for working | ||
with BED, BAM, GFF, and VCF files | ||
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Copyright (c) 2010, Ryan Dale | ||
Copyright (c) 2010,2011 Ryan Dale | ||
All rights reserved. | ||
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This program is free software; you can redistribute it and/or | ||
modify it under the terms of the GNU General Public License | ||
as published by the Free Software Foundation; either version 2 | ||
of the License, or (at your option) any later version. | ||
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Redistribution and use in source and binary forms, with or without modification, | ||
are permitted provided that the following conditions are met: | ||
This program is distributed in the hope that it will be useful, | ||
but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
GNU General Public License for more details. | ||
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* Redistributions of source code must retain the above copyright notice, | ||
this list of conditions and the following disclaimer. | ||
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* Redistributions in binary form must reproduce the above copyright notice, | ||
this list of conditions and the following disclaimer in the documentation | ||
and/or other materials provided with the distribution. | ||
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | ||
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, | ||
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE | ||
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE | ||
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES | ||
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; | ||
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND | ||
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT | ||
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE | ||
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | ||
You should have received a copy of the GNU General Public License along | ||
with this program; if not, write to the Free Software Foundation, Inc., 51 | ||
Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. |
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