Watershed segmentation #767
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… stack of images on memory
JorgeGtz
added
new feature
Codecov Report
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Files 156 157 +1
Lines 6622 6681 +59
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+ Hits 6622 6681 +59
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Checks were not going |
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I think checks won’t run while there are merge conflicts |
JorgeGtz
added
ready to review
and removed
work in progress
HaleySchuhl
requested review from
HaleySchuhl
and removed request for
HaleySchuhl
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I think in debug mode all the frames are plotted, I think we need a different way to visualize this as it opens too many figures in Jupyter |
minor edits, including removing the line that re-disables the debug mode after plotting.
streamline and import specific functions being used rather than the whole pcv package
HaleySchuhl
approved these changes
Apr 27, 2022
HaleySchuhl
approved these changes
May 3, 2022
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Thanks @JorgeGtz and @HaleySchuhl! |
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Describe your changes
Add segment_image_series function. It performs watershed segmentation using the spatial dimensions and time through the frames in the image series.
Type of update
Is this a:
Associated issues
Associated discussion #668
Additional context
This function aims at solving the problem of segmenting overlapping plants in a multi-plant image series