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PlantCV v3.4.1
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@nfahlgren nfahlgren released this 18 Jun 20:59
v3.4.1
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PlantCV v3.4.1 is an intermediate release to address a few issues, particularly with the new JSON output data format.

Summary of changes:

  • Updated format of JSON output files
  • Added plantcv-utils.py script with a json2csv conversion tool for exporting CSV files from the JSON output data
  • plantcv-workflow.py, plantcv-train.py, and plantcv-utils.py are now installed in the environment bin directory
  • pcv.visualize.pseudocolor now has the ability to apply custom padding when cropping
  • Updated skeleton pruning algorithm
  • Combined pruning and skeleton segmentation
  • Put the iterative pruning method into an internal function
  • set roi_type='partial' default for the roi_objects function
  • Add fill_holes function that does a flood fill on black holes inside a binary mask
  • Various documentation updates and improvements
  • Updated the analyze_nir_intensity function to use cv2.calcHist instead of np.histogram
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