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PlantCV v3.6.0
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@nfahlgren nfahlgren released this 22 Aug 22:21
v3.6.0
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DOI

PlantCV v3.6.0 adds new functionality and fixes several bugs.

Summary of changes

  • Updated pcv.visualize.pseudocolor to stop scaling the background values
  • Add image dataset random sampling tool plantcv-utils.py sample_images
  • Added custom ROI polygon tool pcv.roi.custom
  • Added grayscale image value rescaling function pcv.transform.rescale
  • Fixed bug in pcv.roi_objects for evaluating the largest contour
  • Fixed bugs in documentation
  • Added function for correcting for non-uniform illumination pcv.nonuniform_illumination
  • Restricted scikit-image dependency to v0.14.2 to bypass an issue with v0.14.3 in Windows
  • Added function to generate kernel structuring elements
  • Added pip to conda environment dependencies in environment.yml
  • Added improvements to pcv.morphology functions
    • Make it optional for the first segment to be classified as stem regardless in the segment_sort function
    • Update method for sorting through segments in the segment_insertion_angle function, makes it quicker and more robust to measuring every leaf.
    • Update plotting method for segment_id since the previous method can give a weird artifact when plotting segments that have been combined.
    • Update pruning function
    • Removing old warnings that aren't really relevant anymore
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