Repository associated with the publication:
Untangling the effects of plant genotype and soil conditions on the assembly of bacterial and fungal communities in the rhizosphere of the wild Andean blueberry (Vaccinium floribundum Kunth.)
Dario X. Ramirez-Villacis, Andrea Pinos-Leon, Pamela Vega-Polo, Isai Salas-Gonzalez, Corbin D. Jones, María de Lourdes Torres
If you need futher information please contact dxramirez@usfq.edu.ec
This repository contains the count tables obtained after the processing of the amplicon sequence data. The amplicon sequencing raw reads are available at NCBI Sequence Read Archive (Project PRJNA769071).
count_table_16s.csv: CSV table that contains the count table of the ASV obtained for the V3V4 region of the 16s rRNA gene.
taxonomy_16s.csv: CSV table that contains the taxonomy annotation for the ASV obtained for the V3V4 region of the 16s rRNA gene.
count_table_ITS.csv: CSV table that contains the count table of the ASV obtained for the ITS region.
taxonomy_ITS.csv: CSV table that contains the taxonomy annotation for the ASV obtained for the ITS region.
edaphic_factor.csv: CSV table that contains the quantification for all the edaphic factor analyzed.
allele_matrix.csv: CSV table that contains the SSR allele information for the 39 samples analyzed in this study. This information was retrieved from https://osf.io/ej9sf/
metadata.csv: CSV table that contains the associated information to each sample used.