Enterovirus family #51
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| on: | |
| # push: | |
| # branches-ignore: [ main ] | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| name: Render and deploy to Netlify | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| NETLIFY_SITE_ID: 284ddce0-61dd-40b7-ab79-8b5ac77ed457 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Create toolbox.json based on src/toolbox.yaml | |
| uses: mikefarah/yq@master | |
| with: | |
| cmd: yq -M -o=json src/toolbox.yaml > toolbox/toolbox.json | |
| - name: Create families.json based src/families.yaml | |
| uses: mikefarah/yq@master | |
| with: | |
| cmd: yq -M -o=json src/families.yaml > families.json | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "4.2" | |
| use-public-rspm: true | |
| - name: Install rmarkdown | |
| run: | | |
| Rscript -e 'install.packages("rmarkdown")' | |
| - name: Install Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| version: 1.4.549 | |
| tinytex: true | |
| - name: Render Quarto Project | |
| uses: quarto-dev/quarto-actions/render@v2 | |
| with: | |
| to: html | |
| - name: Deploy preview 🚀 | |
| id: deploy_preview | |
| if: github.event_name == 'pull_request' | |
| uses: data-intuitive/netlify-deploy-site@v1 | |
| with: | |
| auth: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| site: ${{ env.NETLIFY_SITE_ID }} | |
| dir: "_site" | |
| alias: "${{ env.BRANCH_NAME }}" | |
| message: "Deploy production ${{ github.ref }}" | |
| - uses: thollander/actions-comment-pull-request@v2 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| message: | | |
| [](${{ steps.deploy_preview.outputs.deploy-url }}) | |
| comment_tag: deploy_status | |
| - uses: thollander/actions-comment-pull-request@v2 | |
| if: github.event_name == 'pull_request' && failure() | |
| with: | |
| message: | | |
| []${{ steps.deploy_preview.outputs.logs }}) | |
| comment_tag: deploy_status |