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Enterovirus family

Enterovirus family #53

on:
# push:
# branches-ignore: [ main ]
pull_request:
types:
- opened
- reopened
- synchronize
name: Render and deploy to Netlify
jobs:
build-deploy:
runs-on: ubuntu-latest
env:
BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
NETLIFY_SITE_ID: 284ddce0-61dd-40b7-ab79-8b5ac77ed457
steps:
- uses: actions/checkout@v3
- name: Create toolbox.json based on src/toolbox.yaml
uses: mikefarah/yq@master
with:
cmd: yq -M -o=json src/toolbox.yaml > toolbox/toolbox.json
- name: Create families.json based src/families.yaml
uses: mikefarah/yq@master
with:
cmd: yq -M -o=json src/families.yaml > families.json
- uses: r-lib/actions/setup-r@v2
with:
r-version: "4.2"
use-public-rspm: true
- name: Install rmarkdown
run: |
Rscript -e 'install.packages("rmarkdown")'
- name: Install Quarto
uses: quarto-dev/quarto-actions/setup@v2
with:
version: 1.4.549
tinytex: true
- name: Render Quarto Project
uses: quarto-dev/quarto-actions/render@v2
with:
to: html
- name: Deploy preview 🚀
id: deploy_preview
if: github.event_name == 'pull_request'
uses: data-intuitive/netlify-deploy-site@v1
with:
auth: ${{ secrets.NETLIFY_AUTH_TOKEN }}
site: ${{ env.NETLIFY_SITE_ID }}
dir: "_site"
alias: "${{ env.BRANCH_NAME }}"
message: "Deploy production ${{ github.ref }}"
- uses: thollander/actions-comment-pull-request@v2
if: github.event_name == 'pull_request'
with:
message: |
[![Deploy: success](https://img.shields.io/badge/Deploy-success-success)](${{ steps.deploy_preview.outputs.deploy-url }})
comment_tag: deploy_status
- uses: thollander/actions-comment-pull-request@v2
if: github.event_name == 'pull_request' && failure()
with:
message: |
[![Deploy: failure](https://img.shields.io/badge/Deploy-failure-critical)]${{ steps.deploy_preview.outputs.logs }})
comment_tag: deploy_status