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Proposal for re-organization of cloud genomics lesson #8

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johnsolk opened this issue Jun 22, 2017 · 0 comments
Open

Proposal for re-organization of cloud genomics lesson #8

johnsolk opened this issue Jun 22, 2017 · 0 comments

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@johnsolk
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johnsolk commented Jun 22, 2017

At dibsi Instructor Training, we discussed the need to re-organize the files and order of the lesson to target a novice audience.

Lesson repo:
https://github.com/data-lessons/cloud-genomics

@taylorreiter @krmaas @blasseigne @carynJohansen

  1. Why Cloud Computing? to establish motivation: 01-Introduction2.md + intro to different types of platforms from 02-logging-onto-cloud.md

  2. Introduction to commandline basics:

a) Finder/file system hierarchy (GUI) vs. commandline navigation with cd, ls, pwd
b) New lesson needed for Windows users to learn how to force Windows OS to show file hierarchy in explorer
c) Use existing shell lesson on files hierarchy

  1. Connecting to remote instance: 02-why-cloud-computing.md + installation of software on a blank instance

  2. Data to and from instance: 03-moving-data.md and 06-data-roundtripping.md, + filezilla info from hbc lesson

  3. Keep background processes running with screen (need explanation) and tmux, with info from this lesson: http://www.datacarpentry.org/cloud-genomics/

  4. Single analysis: 04-single-analysis.md

  5. Parallel analysis: 05-parallel-analysis.md

blasseigne added a commit to blasseigne/cloud-genomics that referenced this issue Jun 22, 2017
blasseigne added a commit to blasseigne/cloud-genomics that referenced this issue Jun 22, 2017
I copied over 4-single-analysis.md according to issue data-lessons#8 and copedited, adding relevant links and making grammar/typo changes
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