Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
src
 
 
 
 
 
 
 
 
 
 

README.md

Gossamer bioinformatics suite

Prerequisites

This has been built on a fresh install of Ubuntu 16 using only the following dependencies:

sudo apt-get install \
        g++ cmake libboost-all-dev pandoc \
	zlib1g-dev libbz2-dev libsqlite3-dev

It should run on any recent standard 64 bit Linux environment, with as little as 2 GB of free RAM.

For best performance, we recommend using a machine with 16-32 GB of RAM.

Gossamer does not build on Ubuntu 14 because the default version of Boost was built with the incorrect ABI.

Building

Need to rewrite these, but here's the basics:

mkdir build
cd build
cmake ..
make
make test
make install

To disable building unit tests (these can take a while):

cmake -DBUILD_tests=OFF ..

To build translucent:

cmake -DBUILD_translucent=ON ..

Documentation

Documentation for each of the executables can be found in

About

Gossamer bioinformatics suite

Resources

License

Releases

No releases published

Packages

No packages published

Languages