A number of fixes for Windows #2795
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In particular interest for windows where multiple attempts should be done before blowing up
Otherwise Windows cannot handle it! ;)
Codecov Report
@@ Coverage Diff @@
## master #2795 +/- ##
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+ Coverage 90.19% 90.2% +0.01%
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Files 246 246
Lines 31618 31631 +13
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+ Hits 28517 28533 +16
+ Misses 3101 3098 -3
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yarikoptic
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Sep 13, 2018
0.10.3 (Sep 13, 2018) -- Almost-perfect This is largely a bugfix release which addressed many (but not yet all) issues of working with git-annex direct and version 6 modes, and operation on Windows in general. Among enhancements you will see the support of public S3 buckets (even with periods in their names), ability to configure new providers interactively, and improved `egrep` search backend. Although we do not require with this release, it is recommended to make sure that you are using a recent `git-annex` since it also had a variety of fixes and enhancements in the past months. Fixes - Parsing of combined short options has been broken since DataLad v0.10.0. ([#2710]) - The `datalad save` instructions shown by `datalad run` for a command with a non-zero exit were incorrectly formatted. ([#2692]) - Decompression of zip files (e.g., through `datalad add-archive-content`) failed on Python 3. ([#2702]) - Windows: - colored log output was not being processed by colorama. ([#2707]) - more codepaths now try multiple times when removing a file to deal with latency and locking issues on Windows. ([#2795]) - Internal git fetch calls have been updated to work around a GitPython `BadName` issue. ([#2712]), ([#2794]) - The progess bar for annex file transferring was unable to handle an empty file. ([#2717]) - `datalad add-readme` halted when no aggregated metadata was found rather than displaying a warning. ([#2731]) - `datalad rerun` failed if `--onto` was specified and the history contained no run commits. ([#2761]) - Processing of a command's results failed on a result record with a missing value (e.g., absent field or subfield in metadata). Now the missing value is rendered as "N/A". ([#2725]). - A couple of documentation links in the "Delineation from related solutions" were misformatted. ([#2773]) - With the latest git-annex, several known V6 failures are no longer an issue. ([#2777]) - In direct mode, commit changes would often commit annexed content as regular Git files. A new approach fixes this and resolves a good number of known failures. ([#2770]) - The reporting of command results failed if the current working directory was removed (e.g., after an unsuccessful `install`). ([#2788]) - When installing into an existing empty directory, `datalad install` removed the directory after a failed clone. ([#2788]) - `datalad run` incorrectly handled inputs and outputs for paths with spaces and other characters that require shell escaping. ([#2798]) - Globbing inputs and outputs for `datalad run` didn't work correctly if a subdataset wasn't installed. ([#2796]) - Minor (in)compatibility with git 2.19 - (no) trailing period in an error message now. ([#2815]) Enhancements and new features - Anonymous access is now supported for S3 and other downloaders. ([#2708]) - A new interface is available to ease setting up new providers. ([#2708]) - Metadata: changes to egrep mode search ([#2735]) - Queries in egrep mode are now case-sensitive when the query contains any uppercase letters and are case-insensitive otherwise. The new mode egrepcs can be used to perform a case-sensitive query with all lower-case letters. - Search can now be limited to a specific key. - Multiple queries (list of expressions) are evaluated using AND to determine whether something is a hit. - A single multi-field query (e.g., `pa*:findme`) is a hit, when any matching field matches the query. - All matching key/value combinations across all (multi-field) queries are reported in the query_matched result field. - egrep mode now shows all hits rather than limiting the results to the top 20 hits. - The documentation on how to format commands for `datalad run` has been improved. ([#2703]) - The method for determining the current working directory on Windows has been improved. ([#2707]) - `datalad --version` now simply shows the version without the license. ([#2733]) - `datalad export-archive` learned to export under an existing directory via its `--filename` option. ([#2723]) - `datalad export-to-figshare` now generates the zip archive in the root of the dataset unless `--filename` is specified. ([#2723]) - After importing `datalad.api`, `help(datalad.api)` (or `datalad.api?` in IPython) now shows a summary of the available DataLad commands. ([#2728]) - Support for using `datalad` from IPython has been improved. ([#2722]) - `datalad wtf` now returns structured data and reports the version of each extension. ([#2741]) - The internal handling of gitattributes information has been improved. A user-visible consequence is that `datalad create --force` no longer duplicates existing attributes. ([#2744]) - The "annex" metadata extractor can now be used even when no content is present. ([#2724]) - The `add_url_to_file` method (called by commands like `datalad download-url` and `datalad add-archive-content`) learned how to display a progress bar. ([#2738]) * tag '0.10.3': (214 commits) Changelog entry for 2.19 git compat fix DOC: slight tune ups to the ChangeLog ENH: link issue/pull #s in CHANGELOG, use tools/link_issues_CHANGELOG BF: remove trailing period while matching a mesage from git DOC: try_multiple_dec: Add description of `duration` parameter CLN: annexrepo: Fix grammar in a recently added comment TST: auto: Reformat comment from 900ee08 DOC: _rmtree: Drop a word from summary line DOC: Info on IDs (fixes gh-2801) BF: diff -- when reraising - just raise, do not raise that instance of exception from new location BF(TST): precommit before removing submodule so there is no batched processes ENH+BF(TST): close established ssh sockets upon test finish BF(TST): One more "clost all log handlers in the test" CHANGELOG.md: Start adding entries for v0.10.3 BF(TST): close cookies db in the teardown since atexit is later, so cannot assure no open files BF(TST): explicitly close created log handlers ENH(TST): @known_failure_windows to replace plain @skip_if_on_windows where there is hope BF(TST): do not swallow output while testing AutomagicIO to not cause some open files issue ENH(TST): Skip a test when cannot remove curent directory BF(TST): explicitly precommit a repo used under swallow_outputs ...
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This pull request fixes #2537
Cherry picked from #2791