Hippocampal_circadian_analysis

Demo of code for analyzing hippocampal circadian rhythms

Overview

See folder feature_extraction for a demo of initial signal processing (PSD and EMD) used to extract features See folder circadian_analysis for a demo analyzing circadian rhythms in the data

Getting started (Mac / Linux)

Clone main repo

git clone --recursive git@github.com:davestanley/Hippocampal_circadian_analysis.git

Update submodules

cd Hippocampal_circadian_analysis
git checkout master
git submodule update --init --recursive

Set all submodule to correct branches (optional)

./checkout_submodules.sh

When pulling, be sure to also update submodules

git pull --recurse-submodules	

Relevant scripts and functions

• preprocessing/demo_script.m - A demo of code for preprocessing data and extracting EEG rhythms
• circadian_EEGrhythms/ratscript_FFT_thetadelta2_arr.m - Extracts power in EEG frequency bands for later processing
• circadian_EEGrhythms/run_allrats_ergodic.m - Analyzes power in EEG frequency bands. Uses ergodicity assumption