metabolism

Vagrant Environment for CellProfiler

Setup

Install dependencies

• Install Vagrant
• Install VirtualBox

Clone this repository and call vagrant up

1. vagrant up (This might take couple of minutes)
2. If you want to install CellProfiler Analyst, set the analyst variable in the Vagrantfile to true

Work with the environment

Synchronise inside vagrant-cpa folder

The current folder will be synched with /vagrant on the virtual machine

SSH into the virtual machine

We can now login via SSH (password is vagrant)

$ ssh -X -p 2222 vagrant@localhost 

You can now call i.e. CellProfiler Analyst with

$ run

And cd into the folder with

$ cpa