version change and mod description

davidebolo1993 · Jul 24, 2023 · 4ef91d6 · 4ef91d6
1 parent 5615ab1
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Showing 7 changed files with 8 additions and 6 deletions.
diff --git a/.Rproj.user/F43DE67C/pcs/files-pane.pper b/.Rproj.user/F43DE67C/pcs/files-pane.pper
@@ -5,5 +5,5 @@
             "ascending": true
         }
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-    "path": "~/NanoR/R"
+    "path": "~/NanoR"
 }
diff --git a/.Rproj.user/F43DE67C/pcs/source-pane.pper b/.Rproj.user/F43DE67C/pcs/source-pane.pper
@@ -1,3 +1,3 @@
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diff --git a/.Rproj.user/F43DE67C/persistent-state b/.Rproj.user/F43DE67C/persistent-state
@@ -1,6 +1,6 @@
 build-last-errors="[]"
 build-last-errors-base-dir="~/NanoR/"
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+build-last-outputs="[{\"type\":0,\"output\":\"==> devtools::document(roclets = c('rd', 'collate', 'namespace'))\\n\\n\"},{\"type\":1,\"output\":\"\\u001B[36mℹ\\u001B[39m Updating \\u001B[34m\\u001B[34mNanoR\\u001B[34m\\u001B[39m documentation\\n\"},{\"type\":1,\"output\":\"\\u001B[36mℹ\\u001B[39m Loading \\u001B[34m\\u001B[34mNanoR\\u001B[34m\\u001B[39m\\n\"},{\"type\":2,\"output\":\"Warning: package ‘plotly’ was built under R version 4.1.1\\nWarning: package ‘ggplot2’ was built under R version 4.1.1\\nWarning: package ‘scales’ was built under R version 4.1.1\\nWarning: package ‘data.table’ was built under R version 4.1.1\\nWarning: package ‘dplyr’ was built under R version 4.1.1\\nWarning: package ‘tidyr’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: \\u001B[1m\\u001B[22mSkipping \\u001B]8;;file:///Users/davide.bolognini/NanoR/NAMESPACE\\u0007\\u001B[34mNAMESPACE\\u001B[39m\\u001B]8;;\\u0007\\n\\u001B[31m✖\\u001B[39m It already exists and was not generated by roxygen2.\\n\"},{\"type\":1,\"output\":\"Documentation completed\\n\\n\"},{\"type\":0,\"output\":\"==> R CMD INSTALL --preclean --no-multiarch --with-keep.source NanoR\\n\\n\"},{\"type\":1,\"output\":\"* installing to library ‘/Users/davide.bolognini/Library/R/arm64/4.1/library’\\n\"},{\"type\":1,\"output\":\"* installing *source* package ‘NanoR’ ...\\n\"},{\"type\":1,\"output\":\"** using staged installation\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** R\\n\"},{\"type\":1,\"output\":\"** data\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"*** moving datasets to lazyload DB\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** inst\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** byte-compile and prepare package for lazy loading\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"Warning messages:\\n\"},{\"type\":1,\"output\":\"1: package ‘plotly’ was built under R version 4.1.1 \\n\"},{\"type\":1,\"output\":\"2: package ‘ggplot2’ was built under R version 4.1.1 \\n\"},{\"type\":1,\"output\":\"3: package ‘scales’ was built under R version 4.1.1 \\n\"},{\"type\":1,\"output\":\"4: package ‘data.table’ was built under R version 4.1.1 \\n\"},{\"type\":1,\"output\":\"5: package ‘dplyr’ was built under R version 4.1.1 \\n\"},{\"type\":1,\"output\":\"6: package ‘tidyr’ was built under R version 4.1.1 \\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** help\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"*** installing help indices\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** building package indices\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from temporary location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":2,\"output\":\"Warning: package ‘plotly’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘ggplot2’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘scales’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘data.table’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘dplyr’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘tidyr’ was built under R version 4.1.1\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package can be loaded from final location\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":2,\"output\":\"Warning: package ‘plotly’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘ggplot2’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘scales’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘data.table’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘dplyr’ was built under R version 4.1.1\\n\"},{\"type\":2,\"output\":\"Warning: package ‘tidyr’ was built under R version 4.1.1\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"** testing if installed package keeps a record of temporary installation path\\n\"},{\"type\":1,\"output\":\"\"},{\"type\":1,\"output\":\"* DONE (NanoR)\\n\"},{\"type\":1,\"output\":\"\"}]"
 compile_pdf_state="{\"tab_visible\":false,\"running\":false,\"target_file\":\"\",\"output\":\"\",\"errors\":[]}"
 files.monitored-path=""
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diff --git a/.Rproj.user/F43DE67C/sources/prop/300FBE73 b/.Rproj.user/F43DE67C/sources/prop/300FBE73
@@ -1,6 +1,6 @@
 {
     "source_window_id": "",
     "Source": "Source",
-    "cursorPosition": "15,0",
+    "cursorPosition": "3,12",
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diff --git a/.Rproj.user/F43DE67C/sources/prop/INDEX b/.Rproj.user/F43DE67C/sources/prop/INDEX
@@ -1,7 +1,9 @@
 ~%2FNanoR%2FDESCRIPTION="300FBE73"
+~%2FNanoR%2FNAMESPACE="2EA45738"
 ~%2FNanoR%2FR%2Falfredstats.R="051BA4F2"
 ~%2FNanoR%2FR%2Fcompare.R="DDB686B2"
 ~%2FNanoR%2FR%2Fheatmap.R="EC1BCDCE"
 ~%2FNanoR%2FR%2Fmuxscan.R="68F33D03"
 ~%2FNanoR%2FREADME.md="668CEBF6"
+~%2FNanoR%2Finst%2FCITATION="44ACE6A0"
 ~%2FNanoR%2Fman%2Fcompare.Rd="35EB6A46"
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: NanoR
 Type: Package
 Title: Analyze MinION and GridION sequencing data
-Version: 4.1
+Version: 4.2
 Author: Davide Bolognini, PhD [aut, cre]
 Maintainer: Davide Bolognini <davidebolognini7@gmail.com>
 Depends:

diff --git a/inst/CITATION b/inst/CITATION
@@ -1,5 +1,5 @@
 year <- "2019"
-note <- sprintf("R package version 4.0")
+note <- sprintf("R package version 4.2")
 
 bibentry(bibtype = "article",
          title = "NanoR: A user-friendly R package to analyze and compare nanopore sequencing data",