More useful pre-commits

.clang-format

@@ -175,4 +175,3 @@ Standard: Cpp11
 TabWidth: 2
 
 UseTab: Never
-

.github/workflows/backward_compatibility.yml

@@ -21,8 +21,8 @@ jobs:
                   git fetch origin ${{ github.ref }} && \
                   git checkout FETCH_HEAD && \
                   mkdir build && cd build && \
-                  cmake .. && make all"; 
-         
+                  cmake .. && make all";
+
          echo $command
 
          docker pull dealii/dealii:v9.3.0-focal

.github/workflows/heat_transfer_ci.yml

@@ -27,8 +27,8 @@ jobs:
                   git fetch origin ${{ github.ref }} && \
                   git checkout FETCH_HEAD && \
                   cd tests/heat && \
-                  ./run_tests.sh"; 
-         
+                  ./run_tests.sh";
+
          echo $command
 
          docker pull dealii/dealii:master-focal

.github/workflows/solid_mechanics_ci.yml

@@ -27,8 +27,8 @@ jobs:
                   git fetch origin ${{ github.ref }} && \
                   git checkout FETCH_HEAD && \
                   cd tests/solid && \
-                  ./run_tests.sh"; 
-         
+                  ./run_tests.sh";
+
          echo $command
 
          docker pull dealii/dealii:master-focal

.pre-commit-config.yaml

@@ -5,7 +5,16 @@ repos:
   hooks:
   - id: clang-format
     exclude: "^utilities"
-
+# Official repo for default hooks
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: 'v4.4.0'
+  hooks:
+  - id: check-xml
+  - id: check-merge-conflict
+  - id: mixed-line-ending
+  - id: trailing-whitespace
+    args: [--markdown-linebreak-ext=md]
+  - id: end-of-file-fixer
 # Official repo for default hooks
 - repo: https://github.com/precice/precice-pre-commit-hooks
   rev: 'v3.1'

examples/Wall_beam/fluid-openfoam/constant/dynamicMeshDict

@@ -19,4 +19,4 @@ displacementLaplacianCoeffs {
 
     diffusivity quadratic inverseDistance (flap);
 
-}
+}

examples/Wall_beam/fluid-openfoam/system/decomposeParDict

@@ -14,4 +14,3 @@ simpleCoeffs
     n               (2 2 3);
     delta           0.001;
 }
-

examples/Wall_beam/fluid-openfoam/system/fvSolution

@@ -12,7 +12,7 @@ solvers
 {
    p
     {
-       solver           GAMG; 
+       solver           GAMG;
        smoother         GaussSeidel;
        nPreSweeps       2;
        nPostSweeps      2;
@@ -37,7 +37,7 @@ solvers
 
    pcorr
    {
-       solver           GAMG; 
+       solver           GAMG;
        smoother         GaussSeidel;
        nPreSweeps       2;
        nPostSweeps      2;
@@ -53,7 +53,7 @@ solvers
 
    pFinal
    {
-       solver           GAMG; 
+       solver           GAMG;
        smoother         GaussSeidel;
        nPreSweeps       2;
        nPostSweeps      2;
@@ -78,7 +78,7 @@ solvers
 
    pcorrFinal
    {
-       solver           GAMG; 
+       solver           GAMG;
        smoother         GaussSeidel;
        nPreSweeps       2;
        nPostSweeps      2;
@@ -119,7 +119,7 @@ PIMPLE
     // relTol 5e-3;
     consistent  true;
     correctPhi  true;
-    momentumPredictor true; 
+    momentumPredictor true;
 }
 
 PISO

examples/Wall_beam/fluid-openfoam/system/preciceDict

@@ -20,7 +20,7 @@ interfaces
     mesh              Fluid-Mesh-Nodes;
     patches           (flap);
     locations         faceNodes;
-    
+
     readData
     (
       Displacement

examples/Wall_beam/solid/Wall_beam.prm

@@ -62,7 +62,7 @@ subsection Linear solver
 
   # Accurately estimate eigenvalues for coarse level Chebyshev solver
   set MF Chebyshev coarse accurate eigenvalues = true
-  
+
   # Number of CG iterations to estiamte condition number for Chebyshev smoother
   set MF Chebyshev number CG iterations = 30
 end
@@ -118,7 +118,7 @@ subsection precice configuration
 
   # Name of the coupling mesh in the precice-config.xml file
   set Read mesh name      = Solid-read
-  
+
   set Write mesh name     = Solid-write
 
   # Name of the read data in the precice-config.xml file

examples/bending_flap/fluid-openfoam/0.orig/p

@@ -28,7 +28,7 @@ boundaryField
     {
         type            zeroGradient;
     }
-    
+
     upperWall
     {
         type            zeroGradient;

examples/bending_flap/fluid-openfoam/0.orig/pointDisplacement

@@ -30,7 +30,7 @@ boundaryField
         type            fixedValue;
         value           $internalField;
     }
-    
+
     upperWall
     {
         type            slip;

examples/bending_flap/fluid-openfoam/constant/dynamicMeshDict

@@ -19,4 +19,4 @@ displacementLaplacianCoeffs {
 
     diffusivity quadratic inverseDistance (flap);
 
-}
+}

examples/bending_flap/fluid-openfoam/removeObsoleteFolders.sh

@@ -19,4 +19,3 @@ if [ -d processor0 ]; then
 	done
 fi
 cd ..
-

examples/bending_flap/fluid-openfoam/system/decomposeParDict

@@ -14,4 +14,3 @@ simpleCoeffs
     n               (2 2 3);
     delta           0.001;
 }
-

examples/bending_flap/fluid-openfoam/system/fvSolution

@@ -13,7 +13,7 @@ solvers
 
     p
     {
-            
+
     solver           PCG;
     preconditioner   DIC;
     tolerance        1e-8;
@@ -66,7 +66,7 @@ PIMPLE
     // relTol 5e-3;
     consistent  true;
     correctPhi  true;
-    momentumPredictor true; 
+    momentumPredictor true;
     nOuterCorrectors	1;
 }
 

examples/bending_flap/fluid-openfoam/system/preciceDict

@@ -20,7 +20,7 @@ interfaces
     mesh              Fluid-Mesh-Nodes;
     patches           (flap);
     locations         faceNodes;
-    
+
     readData
     (
       Displacement

examples/bending_flap/solid/bending_flap.prm

@@ -62,7 +62,7 @@ subsection Linear solver
 
   # Accurately estimate eigenvalues for coarse level Chebyshev solver
   set MF Chebyshev coarse accurate eigenvalues = true
-  
+
   # Number of CG iterations to estiamte condition number for Chebyshev smoother
   set MF Chebyshev number CG iterations = 30
 end
@@ -118,7 +118,7 @@ subsection precice configuration
 
   # Name of the coupling mesh in the precice-config.xml file
   set Read mesh name      = Solid-read
-  
+
   set Write mesh name     = Solid-write
 
   # Name of the read data in the precice-config.xml file

examples/partitioned-heat-conduction/dirichlet.prm

@@ -45,7 +45,7 @@ end
 subsection precice configuration
   # Name of the read coupling mesh in the precice-config.xml file
   set Read mesh name           = Dirichlet-read
-  
+
   # Name of the write coupling mesh in the precice-config.xml file
   set Write mesh name          = Dirichlet-write
 

examples/partitioned-heat-conduction/neumann.prm

@@ -45,7 +45,7 @@ end
 subsection precice configuration
   # Name of the read coupling mesh in the precice-config.xml file
   set Read mesh name           = Neumann-read
-  
+
   # Name of the write coupling mesh in the precice-config.xml file
   set Write mesh name          = Neumann-write
 

examples/tube3d/solid/tube3d.prm

@@ -103,7 +103,7 @@ end
 
 subsection Time
   # End time
-  set End time       = 0.5 
+  set End time       = 0.5
 
   # Time step size
   set Time step size = 1e-4
@@ -118,7 +118,7 @@ subsection precice configuration
 
   # Name of the coupling mesh in the precice-config.xml file
   set Write mesh name     = Solid-write
-  
+
   # Name of the coupling mesh in the precice-config.xml file
   set Read mesh name      = Solid-read
 

tests/heat/partitioned-heat-direct-access/dirichlet.prm

@@ -45,7 +45,7 @@ end
 subsection precice configuration
   # Name of the read coupling mesh in the precice-config.xml file
   set Read mesh name           = Dirichlet-Mesh
-  
+
   # Name of the write coupling mesh in the precice-config.xml file
   set Write mesh name          = Neumann-Mesh
 

tests/heat/partitioned-heat-direct-access/neumann.prm

@@ -45,7 +45,7 @@ end
 subsection precice configuration
   # Name of the read coupling mesh in the precice-config.xml file
   set Read mesh name           = Neumann-Mesh
-  
+
   # Name of the write coupling mesh in the precice-config.xml file
   set Write mesh name          = Dirichlet-Mesh
 

tests/heat/partitioned-heat/dirichlet.prm

@@ -45,7 +45,7 @@ end
 subsection precice configuration
   # Name of the read coupling mesh in the precice-config.xml file
   set Read mesh name           = Dirichlet-read
-  
+
   # Name of the write coupling mesh in the precice-config.xml file
   set Write mesh name          = Dirichlet-write
 

tests/heat/partitioned-heat/neumann.prm

@@ -45,7 +45,7 @@ end
 subsection precice configuration
   # Name of the read coupling mesh in the precice-config.xml file
   set Read mesh name           = Neumann-read
-  
+
   # Name of the write coupling mesh in the precice-config.xml file
   set Write mesh name          = Neumann-write
 

tests/run_tests.sh

@@ -3,4 +3,3 @@
 BASEDIR=$(dirname "$0")
 "${BASEDIR}"/solid/run_tests.sh
 "${BASEDIR}"/heat/run_tests.sh
-

tests/solid/turek_gmg_scalar_referential/turek_gmg_scalar_referential.prm

@@ -12,7 +12,7 @@ subsection Output
    # At which time to write a vtu output file
    set Output tick     = 1
 
-   # Output solution watchpoint 
+   # Output solution watchpoint
    set Output solution = true
 
    # Watchpoint in undeformed configuration to output unknown fields
@@ -59,7 +59,7 @@ subsection Linear solver
 
   # Accurately estimate eigenvalues for coarse level Chebyshev solver
   set MF Chebyshev coarse accurate eigenvalues = true
-  
+
   # Number of CG iterations to estiamte condition number for Chebyshev smoother
   set MF Chebyshev number CG iterations = 30
 end

tests/solid/turek_gmg_tensor2/turek_gmg_tensor2.prm

@@ -12,7 +12,7 @@ subsection Output
    # At which time to write a vtu output file
    set Output tick     = 1
 
-   # Output solution watchpoint 
+   # Output solution watchpoint
    set Output solution = true
 
    # Watchpoint in undeformed configuration to output unknown fields
@@ -59,7 +59,7 @@ subsection Linear solver
 
   # Accurately estimate eigenvalues for coarse level Chebyshev solver
   set MF Chebyshev coarse accurate eigenvalues = true
-  
+
   # Number of CG iterations to estiamte condition number for Chebyshev smoother
   set MF Chebyshev number CG iterations = 30
 end

tests/solid/turek_gmg_tensor2_form0/turek_gmg_tensor2_form0.prm

@@ -12,7 +12,7 @@ subsection Output
    # At which time to write a vtu output file
    set Output tick     = 1
 
-   # Output solution watchpoint 
+   # Output solution watchpoint
    set Output solution = true
 
    # Watchpoint in undeformed configuration to output unknown fields
@@ -59,7 +59,7 @@ subsection Linear solver
 
   # Accurately estimate eigenvalues for coarse level Chebyshev solver
   set MF Chebyshev coarse accurate eigenvalues = true
-  
+
   # Number of CG iterations to estiamte condition number for Chebyshev smoother
   set MF Chebyshev number CG iterations = 30
 end

tests/solid/turek_gmg_tensor4/turek_gmg_tensor4.prm

@@ -12,7 +12,7 @@ subsection Output
    # At which time to write a vtu output file
    set Output tick     = 1
 
-   # Output solution watchpoint 
+   # Output solution watchpoint
    set Output solution = true
 
    # Watchpoint in undeformed configuration to output unknown fields
@@ -59,7 +59,7 @@ subsection Linear solver
 
   # Accurately estimate eigenvalues for coarse level Chebyshev solver
   set MF Chebyshev coarse accurate eigenvalues = true
-  
+
   # Number of CG iterations to estiamte condition number for Chebyshev smoother
   set MF Chebyshev number CG iterations = 30
 end

tests/solid/turek_gmg_tensor4_ns/turek_gmg_tensor4_ns.prm

@@ -12,7 +12,7 @@ subsection Output
    # At which time to write a vtu output file
    set Output tick     = 1
 
-   # Output solution watchpoint 
+   # Output solution watchpoint
    set Output solution = true
 
    # Watchpoint in undeformed configuration to output unknown fields
@@ -59,7 +59,7 @@ subsection Linear solver
 
   # Accurately estimate eigenvalues for coarse level Chebyshev solver
   set MF Chebyshev coarse accurate eigenvalues = true
-  
+
   # Number of CG iterations to estiamte condition number for Chebyshev smoother
   set MF Chebyshev number CG iterations = 30
 end