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Minor mods
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amaunz committed Apr 22, 2010
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Showing 1 changed file with 7 additions and 6 deletions.
13 changes: 7 additions & 6 deletions README
Expand Up @@ -6,14 +6,15 @@ http://www.springerlink.com/content/x22202075j328w46/

Target classes: active (1) and inactive (0)

|-- README this file
|-- README this file

|-- .smi compounds in SMILES format
|-- .class lazar and libfminer compatible input format
|-- .active sfgm compatible input format (actives)
|-- .inactive sfgm compatible input format (inactives)
|-- .smi lazar and libfminer compatible input format (compounds in SMILES format)
|-- .class lazar and libfminer compatible input format (target class)
|-- .active sfgm compatible input format (target class active)
|-- .inactive sfgm compatible input format (target class inactive)
|-- .gsp gSpan compatible input format (compounds)

How to create gSpan input file format (perl and ruby required):
How to create gSpan format from SMILES format (perl and ruby required):

1) Remove numbers from filename.smi file to obtain 1 SMILES per row in file filename.no_nr.smi
2) do 'babel -d -ismi filename.no_nr.smi -osdf filename.sdf' to convert to MOL format
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