switch to pyproject.toml and flit

bsb/__init__.py

@@ -1,3 +1,7 @@
+"""
+A component framework for multiscale bottom-up neural modelling.
+"""
+
 __version__ = "4.0.0a56"
 
 import functools

pyproject.toml

@@ -1,2 +1,89 @@
+[build-system]
+requires = ["flit_core >=3.2,<4"]
+build-backend = "flit_core.buildapi"
+
+[project]
+name = "bsb"
+authors = [{ name = "Robin De Schepper", email = "robingilbert.deschepper@unipv.it" }]
+readme = "README.md"
+license = { file = "LICENSE" }
+classifiers = ["License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)"]
+dynamic = ["version", "description"]
+dependencies = [
+    "bsb-hdf5~=0.9.0",
+    "h5py~=3.0",
+    "numpy~=1.19",
+    "scipy~=1.5",
+    "scikit-learn~=1.0",
+    "plotly~=5.5",
+    "colour~=0.1",
+    "errr~=1.2",
+    "rtree~=1.0",
+    "psutil~=5.8",
+    "pynrrd~=1.0",
+    "PyYAML~=6.0",
+    "morphio~=3.3",
+    "toml",
+    "requests~=2.30",
+    "urllib3~=2.0",
+    "appdirs~=1.4",
+    "neo[nixio]",
+    "tqdm~=4.50",
+    "shortuuid",
+    "quantities",
+]
+
+[project.urls]
+Home = "https://github.com/dbbs-lab/bsb"
+Documentation = "https://bsb.readthedocs.io/"
+"Bug Tracker" = "https://github.com/dbbs-lab/bsb/issues/"
+"Source Code" = "https://github.com/dbbs-lab/bsb/"
+
+[project.entry-points."console-scripts"]
+bsb = "bsb.cli:handle_cli"
+
+[project.entry-points."bsb.storage.engines"]
+fs = "bsb.storage.fs"
+
+[project.entry-points."bsb.simulation_backends"]
+arbor = "bsb.simulators.arbor"
+nest = "bsb.simulators.nest"
+neuron = "bsb.simulators.neuron"
+
+[project.entry-points."bsb.commands"]
+commands = "bsb.cli.commands._commands"
+projects = "bsb.cli.commands._projects"
+
+[project.entry-points."bsb.config.parsers"]
+json = "bsb.config.parsers.json"
+yaml = "bsb.config.parsers.yaml"
+
+[project.entry-points."bsb.config.templates"]
+bsb_templates = "bsb.config.templates"
+
+[project.entry-points."bsb.options"]
+verbosity = "bsb._options:verbosity"
+sudo = "bsb._options:sudo"
+version = "bsb._options:version"
+config = "bsb._options:config"
+profiling = "bsb._options:profiling"
+
+[project.optional-dependencies]
+dev = [
+    "sphinx~=6.0",
+    "furo",
+    "pre-commit",
+    "black~=22.3.0",
+    "nrn-subprocess~=1.3.4",
+    "sphinxemoji",
+    "sphinx_design~=0.2",
+    "sphinx-copybutton~=0.5",
+    "sphinxext-bsb~=0.2.1",
+    "snakeviz",
+]
+arbor = ["arbor~=0.6", "arborize[arbor]==4.0.0a4"]
+neuron = ["nrn-patch==4.0.0a4", "arborize[neuron]==4.0.0a4"]
+mpi = ["mpi4py~=3.0", "zwembad", "mpilock~=1.1"]
+
 [tool.black]
 line-length = 90