Add function to update MorphologyRepository metadata. Use this functi… (

#743)

* Add function to update MorphologyRepository metadata. Use this function to store new metadata instead of loading all metadata.

* bump bsb-hdf5

* Update setup.py

* Update plugins.txt

---------

Co-authored-by: Robin De Schepper <robin.deschepper93@gmail.com>

bsb/placement/distributor.py

@@ -321,13 +321,13 @@ def _specials(self, partitions, indicator, positions):
             mr = self.scaffold.morphologies
             uid = uuid.uuid4()
             loaders = []
-            all_meta = mr.get_all_meta()
+            all_meta = {}
             for gen_morpho, i in generated.items():
                 name = f"{prefix}-{uid}-{i}"
                 saved = mr.save(name, gen_morpho, update_meta=False)
                 all_meta[name] = saved.get_meta()
                 loaders.append(saved)
-            mr.set_all_meta(all_meta)
+            mr.update_all_meta(all_meta)
             morphologies = MorphologySet(loaders, indices)
         if not isinstance(morphologies, MorphologySet) and morphologies is not None:
             morphologies = MorphologySet(loaders, morphologies)

bsb/storage/interfaces.py

@@ -828,6 +828,16 @@ def set_all_meta(self, all_meta):
         :type all_meta: dict
         """
         pass
+
+    @abc.abstractmethod
+    def update_all_meta(self, meta):
+        """
+        Update the metadata of stored morphologies with the provided key values
+
+        :param meta: Metadata dictionary.
+        :type meta: str
+        """
+        pass
 
     def import_swc(self, file, name=None, overwrite=False):
         """

plugins.txt

@@ -1,5 +1,5 @@
 # Plugins
-bsb-hdf5==0.8.1
+bsb-hdf5==0.8.3
 
 # Plugin dependencies
 shortuuid

setup.py

@@ -17,7 +17,7 @@
     long_description = fh.read()
 
 requires = [
-    "bsb-hdf5~=0.8.1",
+    "bsb-hdf5~=0.8.3",
     "h5py~=3.0",
     "numpy~=1.19",
     "scipy~=1.5",