Scripts to perform amplicon sequencing analysis for Norovirus genotypes. Input fastq file from MiSeqII Illumina sequencer (already demultiplexed) for pair ended reads.
Input fastq format: poolyear_R1_001.fastq.gz / poolyear_R2_001.fastq.gz -> example 2020_R1_001.fastq.gz / 2020_R2_001.fastq.gz
