The File “hwesupp.Rmd” is an R Markdown file that contains Appendices S1–S6, and is sufficient to reproduce all of the results of Gerard (2022). It has been knitted into “hwesupp.pdf”
The file “sims.csv” contains the simulation output from Appendix S5 of “hwesupp.Rmd”.
The file “table2_power.Rmd” contains one iteration of “table2_power.R” from Wang et al. (2021), annotated to demonstrate the mistakes here. It has been knitted into “table2_power.pdf”.
Much of the code from Wang et al. (2021) and Wang et al. (2022) were
packaged by me in the {hexocto} package on GitHub
https://github.com/dcgerard/hexocto.
A fork of the original code from Wang et al. (2021) and Wang et al. (2022) may be found at at https://github.com/dcgerard/hexaploid and https://github.com/dcgerard/OctoploidDeer.
This material is based upon work supported by the National Science Foundation under Grant No. 2132247. The opinions, findings, and conclusions or recommendations expressed are those of the author and do not necessarily reflect the views of the National Science Foundation.
Gerard, David. 2022. “Comment on Three Papers about Hardy–Weinberg Equilibrium Tests in Autopolyploids.” Frontiers in Genetics 13. https://doi.org/10.3389/fgene.2022.1027209.
Wang, Jing, Li Feng, Shuaicheng Mu, Ang Dong, Jinwen Gan, Zhenying Wen, Juan Meng, Mingyu Li, Rongling Wu, and Lidan Sun. 2022. “Asymptotic tests for Hardy-Weinberg equilibrium in hexaploids.” Horticulture Research 9. https://doi.org/10.1093/hr/uhac104.
Wang, Jing, Xuemin Lv, Li Feng, Ang Dong, Dan Liang, and Rongling Wu. 2021. “A Tracing Model for the Evolutionary Equilibrium of Octoploids.” Frontiers in Genetics 12. https://doi.org/10.3389/fgene.2021.794907.