viralSequencing

Scripts and notes for viral genomic sequencing.

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
2024-01-05_miniasmPipeline.sh		2024-01-05_miniasmPipeline.sh
Cleanup_28sept23.sh		Cleanup_28sept23.sh
README.md		README.md
alignLabelStripper.sh		alignLabelStripper.sh
compressFast5.sh		compressFast5.sh
fcov_medakaPipeline.sh		fcov_medakaPipeline.sh
fhvMiniasmPipelineDec23.sh		fhvMiniasmPipelineDec23.sh
fhvMiniasmPipelineNov23.sh		fhvMiniasmPipelineNov23.sh
fhvPipeline10oct23.sh		fhvPipeline10oct23.sh
fhvPipeline23oct23.sh		fhvPipeline23oct23.sh
groupConsensus.sh		groupConsensus.sh
groupVCF.sh		groupVCF.sh
inactiveBarcodes.sh		inactiveBarcodes.sh
medakaPipeline.sh		medakaPipeline.sh
medakaPipeline2.sh		medakaPipeline2.sh
medakaPipeline28sept23.sh		medakaPipeline28sept23.sh
medakaPipelineTest.sh		medakaPipelineTest.sh
metagenomePipeline.sh		metagenomePipeline.sh
ontscript.sh		ontscript.sh
ontscript_auto.sh		ontscript_auto.sh
ontscript_auto_test.sh		ontscript_auto_test.sh
ontscript_auto_test2.sh		ontscript_auto_test2.sh
snippetTest.sh		snippetTest.sh
snippetTest2.sh		snippetTest2.sh
statreport.sh		statreport.sh
test_bash.sh		test_bash.sh

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