Skip to content

dduv-ddit/excalibur_simulations

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

8 Commits
 
 
 
 
 
 

Repository files navigation

excalibur_simulations

This repository contains all the necessary codes to reproduce the preliminary test selection and the simulations used to establish our ensemble method Excalibur

Preliminary test selection

  • All the code used to perform the preliminary tests selection
  • The folder results contains all the intermediate results from the preliminary selection steps

Numerical experiments and simulations design

  • Input data from COSI contains the data simulated via COSI program
  • Raw R results from simulations contains R data results for the 18 power experiments and 9 type I error experiments obtained thanks to the simulation pipeline
  • All the necessary functions to run the simulation pipeline (that can be launch via script_general_simulation.R

Excalibur.R is the function to use our proposed optimal ensemble method based on a combination of 33 aggregation tests

About

Prioritization of genetic regions based on cohort (case vs control) using association testing

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published