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Position Frequency Matrix Featurizer #2896

Merged
merged 27 commits into from Apr 22, 2022
Merged

Position Frequency Matrix Featurizer #2896

merged 27 commits into from Apr 22, 2022

Commits on Feb 25, 2022

  1. hhblits/hhsearch wrapper, tests, tutorial, docs

    @tonydavis629
    tonydavis629 committed Feb 25, 2022
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  2. add missing example_db files

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    tonydavis629 committed Feb 25, 2022
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Commits on Mar 3, 2022

  1. fixed test

    @tonydavis629
    tonydavis629 committed Mar 3, 2022
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  2. Merge branch 'master' into hhsuite 

    merge commit
    @tonydavis629
    tonydavis629 committed Mar 3, 2022
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Commits on Mar 4, 2022

  1. fix test

    @tonydavis629
    tonydavis629 committed Mar 4, 2022
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  2. Merge branch 'master' into hhsuite

    @tonydavis629
    tonydavis629 committed Mar 4, 2022
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  3. fix doc test

    @tonydavis629
    tonydavis629 committed Mar 4, 2022
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Commits on Mar 8, 2022

  1. fix doctest

    @tonydavis629
    tonydavis629 committed Mar 8, 2022
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  2. Merge branch 'master' into hhsuite

    @tonydavis629
    tonydavis629 committed Mar 8, 2022
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Commits on Mar 9, 2022

  1. msa to dataset added

    @tonydavis629
    tonydavis629 committed Mar 9, 2022
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Commits on Mar 10, 2022

  1. seq_feat

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    tonydavis629 committed Mar 10, 2022
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Commits on Mar 11, 2022

  1. seq_feat

    @tonydavis629
    tonydavis629 committed Mar 11, 2022
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Commits on Mar 28, 2022

  1. Merge branch 'master' into seq_feat

    @tonydavis629
    tonydavis629 committed Mar 28, 2022
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  2. pfm featurizer

    @tonydavis629
    tonydavis629 committed Mar 28, 2022
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  3. sequence featurizers group

    @tonydavis629
    tonydavis629 committed Mar 28, 2022
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Commits on Apr 8, 2022

  1. one_hot

    @tonydavis629
    tonydavis629 committed Apr 8, 2022
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  2. position freq matrix

    @tonydavis629
    tonydavis629 committed Apr 8, 2022
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  3. pfm to ppm

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    tonydavis629 committed Apr 8, 2022
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Commits on Apr 11, 2022

  1. msa_to_dataset test complete

    @tonydavis629
    tonydavis629 committed Apr 11, 2022
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  2. move pfm_to_ppm to test_pfm

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    tonydavis629 committed Apr 11, 2022
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  3. updated docs for PFM

    @tonydavis629
    tonydavis629 committed Apr 11, 2022
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  4. yapf, flake8, doctest

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    tonydavis629 committed Apr 11, 2022
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  5. Merge branch 'master' into seq_feat

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    tonydavis629 committed Apr 11, 2022
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Commits on Apr 15, 2022

  1. remove bioconda from requirements channels

    @tonydavis629
    tonydavis629 committed Apr 15, 2022
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Commits on Apr 18, 2022

  1. lowecase bio

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    tonydavis629 committed Apr 18, 2022
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Commits on Apr 22, 2022

  1. move bio.seq import to function

    @tonydavis629
    tonydavis629 committed Apr 22, 2022
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  2. fix base_classes.py formatting

    @tonydavis629
    tonydavis629 committed Apr 22, 2022
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