GNN Modular encoder layers

[tonydavis629]

Description

Adds in a few pytorch geometric options for GNN layers in GNNModular, and cleans up some of the comments left from previous PRs.

Type of change

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• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • In this case, we recommend to discuss your modification on GitHub issues before creating the PR
• Documentations (modification for documents)

Checklist

• My code follows the style guidelines of this project
• Run yapf -i <modified file> and check no errors (yapf version must be 0.32.0)
• Run mypy -p deepchem and check no errors
• Run flake8 <modified file> --count and check no errors
• Run python -m doctest <modified file> and check no errors
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• I have added tests that prove my fix is effective or that my feature works
• New unit tests pass locally with my changes
• I have checked my code and corrected any misspellings

[rbharath]

LGTM, feel free to merge in once CI clear