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Compilation fails with CMake version 3.14.0 and g++ version 4.8.5 #101

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Andrea-Oliveri opened this issue Mar 1, 2020 · 9 comments
Closed

Compilation fails with CMake version 3.14.0 and g++ version 4.8.5 #101

Andrea-Oliveri opened this issue Mar 1, 2020 · 9 comments
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@salvacarrion @sanromra

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@Andrea-Oliveri
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Good Morning,
I am experiencing issues compiling eddl using CMake version 3.14.0 and g++ version 4.8.5 with the following CMake flags: -DBUILD_TARGET=CPU -DBUILD_SHARED_LIB=ON -DMKL=ON -DBUILD_PROTOBUF=OFF -DBUILD_OPENMP=ON -DBUILD_HPC=ON -DBUILD_TESTS=ON -DBUILD_EXAMPLES=ON -DCMAKE_INSTALL_PREFIX=/home/oliveri/oliveri/eddl on Linux CentOS.
However, everything works on my machine with CMake version 3.16.4 and g++ version 7.4.0 on Ubuntu.
Here is the output of CMake:

-- The CXX compiler identification is GNU 4.8.5
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_CXX: -fopenmp (found version "3.1")
-- Found OpenMP: TRUE (found version "3.1")
-- Found OpenMP, version 3
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7")
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Install path: /home/oliveri/oliveri/eddl
-- ===========================================
-- ===========================================
-- Build type: Release
-- Build target: CPU
-- Build tests: ON
-- Build examples: ON
-- Build OpenMP: ON
-- Build Protobuf: OFF
-- Build HPC: ON
-- Use Intel-MKL: ON
-- C++ compiler: GNU
-- C++ flags:  -DEIGEN_FAST_MATH -pipe
-- C++ flags (release): -Ofast -march=native -fno-signed-zeros -fno-trapping-math -funroll-loops -frename-registers
-- C++ flags (debug): -g -Og
-- CUDA Enabled:
-- CUDA flags:
-- ===========================================
-- ===========================================
-- Configuring done
-- Generating done
-- Build files have been written to: /home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/build

and here is the output upon compilation with make:

Scanning dependencies of target eddl
[  0%] Building CXX object CMakeFiles/eddl.dir/src/random.cpp.o
[  1%] Building CXX object CMakeFiles/eddl.dir/src/utils.cpp.o
[  1%] Building CXX object CMakeFiles/eddl.dir/src/apis/eddl.cpp.o
[  2%] Building CXX object CMakeFiles/eddl.dir/src/descriptors/descriptor_conv.cpp.o
[  2%] Building CXX object CMakeFiles/eddl.dir/src/apis/eddlT.cpp.o
[  3%] Building CXX object CMakeFiles/eddl.dir/src/descriptors/descriptor_pool.cpp.o
[  4%] Building CXX object CMakeFiles/eddl.dir/src/descriptors/descriptor_permute.cpp.o
[  4%] Building CXX object CMakeFiles/eddl.dir/src/descriptors/descriptor_select.cpp.o
[  5%] Building CXX object CMakeFiles/eddl.dir/src/descriptors/descriptor_reduce.cpp.o
[  5%] Building CXX object CMakeFiles/eddl.dir/src/descriptors/descriptor_tensor.cpp.o
[  6%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/cpu_comparison.cpp.o
[  6%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/cpu_create.cpp.o
[  7%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/cpu_core.cpp.o
[  8%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/cpu_generator.cpp.o
[  8%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/cpu_da.cpp.o
[  8%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/cpu_math.cpp.o
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/random.cpp: In function ‘void build_randn_table()’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/random.cpp:55:58: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         RTable = get_fmem(MAX_RTABLE, "build_randn_table");
                                                          ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/utils.cpp: In function ‘char* humanSize(uint64_t)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/utils.cpp:97:50: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
     char *suffix[] = {"B", "KB", "MB", "GB", "TB"};
                                                  ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/utils.cpp:97:50: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/utils.cpp:97:50: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/utils.cpp:97:50: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/utils.cpp:97:50: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
[  8%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/cpu_reduction.cpp.o
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/descriptors/descriptor_conv.cpp: In member function ‘void ConvolDescriptor::build(Tensor*)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/descriptors/descriptor_conv.cpp:108:83: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         ptrI=get_fmem(A->shape[0] * r * c * kr * kc * kz,"ConvolDescriptor::build");
                                                                                   ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/descriptors/descriptor_conv.cpp: In member function ‘void ConvolDescriptor::resize(int)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/descriptors/descriptor_conv.cpp:151:74: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         ptrI=get_fmem(b * r * c * kr * kc * kz, "ConvolDescriptor::build");
                                                                          ^
[  9%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/nn/cpu_activations.cpp.o
[  9%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/nn/cpu_conv.cpp.o
[ 10%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/nn/cpu_losses.cpp.o
[ 11%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/nn/cpu_metrics.cpp.o
[ 11%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/nn/cpu_pool.cpp.o
[ 11%] Building CXX object CMakeFiles/eddl.dir/src/hardware/cpu/nn/cpu_tensor_nn.cpp.o
[ 12%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer.cpp.o
[ 12%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_constant.cpp.o
[ 13%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_glorot_normal.cpp.o
[ 13%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_glorot_uniform.cpp.o
[ 14%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_indentity.cpp.o
[ 14%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_orthogonal.cpp.o
[ 15%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_random_normal.cpp.o
[ 15%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_random_uniform.cpp.o
[ 16%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_truncated_normal.cpp.o
[ 16%] Building CXX object CMakeFiles/eddl.dir/src/initializers/initializer_variance_scaling.cpp.o
[ 17%] Building CXX object CMakeFiles/eddl.dir/src/layers/constraints/constraint.cpp.o
[ 17%] Building CXX object CMakeFiles/eddl.dir/src/layers/constraints/constraint_max_norm.cpp.o
[ 18%] Building CXX object CMakeFiles/eddl.dir/src/layers/constraints/constraint_min_max_norm.cpp.o
[ 18%] Building CXX object CMakeFiles/eddl.dir/src/layers/constraints/constraint_non_neg.cpp.o
[ 19%] Building CXX object CMakeFiles/eddl.dir/src/layers/constraints/constraint_unit_norm.cpp.o
[ 19%] Building CXX object CMakeFiles/eddl.dir/src/layers/conv/layer_conv.cpp.o
[ 20%] Building CXX object CMakeFiles/eddl.dir/src/layers/conv/layer_transposed_conv.cpp.o
[ 20%] Building CXX object CMakeFiles/eddl.dir/src/layers/conv/layer_upsampling.cpp.o
[ 21%] Building CXX object CMakeFiles/eddl.dir/src/layers/core/layer_activation.cpp.o
[ 21%] Building CXX object CMakeFiles/eddl.dir/src/layers/core/layer_dense.cpp.o
[ 22%] Building CXX object CMakeFiles/eddl.dir/src/layers/core/layer_drop.cpp.o
[ 22%] Building CXX object CMakeFiles/eddl.dir/src/layers/core/layer_embedding.cpp.o
[ 23%] Building CXX object CMakeFiles/eddl.dir/src/layers/core/layer_input.cpp.o
[ 23%] Building CXX object CMakeFiles/eddl.dir/src/layers/core/layer_reshape.cpp.o
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[ 25%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_crop.cpp.o
[ 25%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_crop_random.cpp.o
[ 26%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_crop_scale.cpp.o
[ 26%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_crop_scale_random.cpp.o
[ 27%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_cutout.cpp.o
[ 27%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_cutout_random.cpp.o
[ 28%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_da.cpp.o
[ 28%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_flip.cpp.o
[ 29%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_flip_random.cpp.o
[ 29%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_rotate.cpp.o
[ 30%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_rotate_random.cpp.o
[ 30%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_scale.cpp.o
[ 31%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_scale_random.cpp.o
[ 31%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_shift.cpp.o
[ 32%] Building CXX object CMakeFiles/eddl.dir/src/layers/da/layer_shift_random.cpp.o
[ 32%] Building CXX object CMakeFiles/eddl.dir/src/layers/generators/layer_gauss.cpp.o
[ 33%] Building CXX object CMakeFiles/eddl.dir/src/layers/generators/layer_generator.cpp.o
[ 33%] Building CXX object CMakeFiles/eddl.dir/src/layers/generators/layer_uniform.cpp.o
[ 34%] Building CXX object CMakeFiles/eddl.dir/src/layers/layer.cpp.o
[ 34%] Building CXX object CMakeFiles/eddl.dir/src/layers/merge/layer_add.cpp.o
[ 35%] Building CXX object CMakeFiles/eddl.dir/src/layers/merge/layer_average.cpp.o
[ 35%] Building CXX object CMakeFiles/eddl.dir/src/layers/merge/layer_concat.cpp.o
[ 36%] Building CXX object CMakeFiles/eddl.dir/src/layers/merge/layer_matmul.cpp.o
[ 36%] Building CXX object CMakeFiles/eddl.dir/src/layers/merge/layer_maximum.cpp.o
[ 37%] Building CXX object CMakeFiles/eddl.dir/src/layers/merge/layer_minimum.cpp.o
[ 37%] Building CXX object CMakeFiles/eddl.dir/src/layers/merge/layer_subtract.cpp.o
[ 38%] Building CXX object CMakeFiles/eddl.dir/src/layers/noise/layer_gaussian.cpp.o
[ 38%] Building CXX object CMakeFiles/eddl.dir/src/layers/normalization/bnorm.cpp.o
[ 39%] Building CXX object CMakeFiles/eddl.dir/src/layers/normalization/layer_batchnorm.cpp.o
[ 39%] Building CXX object CMakeFiles/eddl.dir/src/layers/normalization/layer_groupnorm.cpp.o
[ 40%] Building CXX object CMakeFiles/eddl.dir/src/layers/normalization/layer_layernorm.cpp.o
[ 41%] Building CXX object CMakeFiles/eddl.dir/src/layers/normalization/layer_norm.cpp.o
[ 41%] Building CXX object CMakeFiles/eddl.dir/src/layers/normalization/layer_normmax.cpp.o
[ 42%] Building CXX object CMakeFiles/eddl.dir/src/layers/normalization/layer_normminmax.cpp.o
[ 42%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_abs.cpp.o
[ 43%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_diff.cpp.o
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[ 45%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_log10.cpp.o
[ 45%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_log2.cpp.o
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[ 46%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_operator.cpp.o
[ 47%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_permute.cpp.o
[ 47%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_pow.cpp.o
[ 48%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_select.cpp.o
[ 48%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_sqrt.cpp.o
[ 49%] Building CXX object CMakeFiles/eddl.dir/src/layers/operators/layer_sum.cpp.o
[ 49%] Building CXX object CMakeFiles/eddl.dir/src/layers/pool/layer_avgpool.cpp.o
[ 50%] Building CXX object CMakeFiles/eddl.dir/src/layers/pool/layer_maxpool.cpp.o
[ 50%] Building CXX object CMakeFiles/eddl.dir/src/layers/pool/layer_pool.cpp.o
[ 51%] Building CXX object CMakeFiles/eddl.dir/src/layers/recurrent/layer_lstm.cpp.o
[ 51%] Building CXX object CMakeFiles/eddl.dir/src/layers/recurrent/layer_rnn.cpp.o
[ 52%] Building CXX object CMakeFiles/eddl.dir/src/layers/reductions/layer_max.cpp.o
[ 52%] Building CXX object CMakeFiles/eddl.dir/src/layers/reductions/layer_mean.cpp.o
[ 53%] Building CXX object CMakeFiles/eddl.dir/src/layers/reductions/layer_min.cpp.o
[ 53%] Building CXX object CMakeFiles/eddl.dir/src/layers/reductions/layer_reduction.cpp.o
[ 54%] Building CXX object CMakeFiles/eddl.dir/src/layers/reductions/layer_var.cpp.o
[ 54%] Building CXX object CMakeFiles/eddl.dir/src/layers/reductions/layer_sum.cpp.o
[ 55%] Building CXX object CMakeFiles/eddl.dir/src/losses/loss.cpp.o
[ 55%] Building CXX object CMakeFiles/eddl.dir/src/losses/loss_cross_entropy.cpp.o
[ 56%] Building CXX object CMakeFiles/eddl.dir/src/losses/loss_hinge.cpp.o
[ 56%] Building CXX object CMakeFiles/eddl.dir/src/losses/loss_mae.cpp.o
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[ 59%] Building CXX object CMakeFiles/eddl.dir/src/losses/loss_soft_cross_entropy.cpp.o
[ 59%] Building CXX object CMakeFiles/eddl.dir/src/metrics/metric.cpp.o
[ 60%] Building CXX object CMakeFiles/eddl.dir/src/metrics/metric_categorical_acc.cpp.o
[ 60%] Building CXX object CMakeFiles/eddl.dir/src/metrics/metric_mean_absolute_error.cpp.o
[ 61%] Building CXX object CMakeFiles/eddl.dir/src/metrics/metric_mean_relative_error.cpp.o
[ 61%] Building CXX object CMakeFiles/eddl.dir/src/metrics/metric_mean_squared_error.cpp.o
[ 62%] Building CXX object CMakeFiles/eddl.dir/src/metrics/metric_sum.cpp.o
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[ 64%] Building CXX object CMakeFiles/eddl.dir/src/net/net_build.cpp.o
[ 64%] Building CXX object CMakeFiles/eddl.dir/src/net/net_func.cpp.o
[ 65%] Building CXX object CMakeFiles/eddl.dir/src/net/netloss.cpp.o
[ 65%] Building CXX object CMakeFiles/eddl.dir/src/optimizers/optim.cpp.o
[ 66%] Building CXX object CMakeFiles/eddl.dir/src/optimizers/optim_adadelta.cpp.o
[ 66%] Building CXX object CMakeFiles/eddl.dir/src/optimizers/optim_adagrad.cpp.o
[ 67%] Building CXX object CMakeFiles/eddl.dir/src/optimizers/optim_adam.cpp.o
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[ 68%] Building CXX object CMakeFiles/eddl.dir/src/optimizers/optim_rmsprop.cpp.o
[ 69%] Building CXX object CMakeFiles/eddl.dir/src/optimizers/optim_sgd.cpp.o
[ 69%] Building CXX object CMakeFiles/eddl.dir/src/regularizers/regularizer.cpp.o
[ 70%] Building CXX object CMakeFiles/eddl.dir/src/regularizers/regularizer_l1.cpp.o
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[ 71%] Building CXX object CMakeFiles/eddl.dir/src/regularizers/regularizer_l2.cpp.o
[ 71%] Building CXX object CMakeFiles/eddl.dir/src/tensor/cnpy/cnpy.cpp.o
[ 72%] Building CXX object CMakeFiles/eddl.dir/src/tensor/nn/tensor_activations.cpp.o
[ 72%] Building CXX object CMakeFiles/eddl.dir/src/tensor/nn/tensor_conv.cpp.o
[ 73%] Building CXX object CMakeFiles/eddl.dir/src/tensor/nn/tensor_core_nn.cpp.o
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/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/nn/tensor_core_nn.cpp: In member function ‘void Tensor::resize(int, float*)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/nn/tensor_core_nn.cpp:37:47: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
           ptr = get_fmem(size,"Tensor::resize");
                                               ^
[ 79%] Building CXX object CMakeFiles/eddl.dir/src/tensor/tensor_serialization.cpp.o
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor.cpp: In member function ‘void Tensor::updateData(float*)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor.cpp:104:82: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         if (fptr==nullptr) { this->ptr = get_fmem(this->size,"Tensor::updateData"); }
                                                                                  ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp: In static member function ‘static Tensor* Tensor::load_from_img(const string&, const string&)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:45: error: expected unqualified-id before ‘&’ token
     } catch(const std::bad_array_new_length &e) {
                                             ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:45: error: expected ‘)’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:45: error: expected ‘{’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:46: error: ‘e’ was not declared in this scope
     } catch(const std::bad_array_new_length &e) {
                                              ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:47: error: expected ‘;’ before ‘)’ token
     } catch(const std::bad_array_new_length &e) {
                                               ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp: In static member function ‘static Tensor* Tensor::load_from_txt(std::ifstream&, char, int)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:45: error: expected unqualified-id before ‘&’ token
     } catch(const std::bad_array_new_length &e) {
                                             ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:45: error: expected ‘)’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:45: error: expected ‘{’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:46: error: ‘e’ was not declared in this scope
     } catch(const std::bad_array_new_length &e) {
                                              ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:47: error: expected ‘;’ before ‘)’ token
     } catch(const std::bad_array_new_length &e) {
                                               ^
make[2]: *** [CMakeFiles/eddl.dir/src/tensor/tensor_serialization.cpp.o] Error 1
make[1]: *** [CMakeFiles/eddl.dir/all] Error 2
make: *** [all] Error 2
[  1%] Building CXX object CMakeFiles/eddl.dir/src/tensor/tensor_serialization.cpp.o
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp: In static member function ‘static Tensor* Tensor::load_from_img(const string&, const string&)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:45: error: expected unqualified-id before ‘&’ token
     } catch(const std::bad_array_new_length &e) {
                                             ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:45: error: expected ‘)’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:45: error: expected ‘{’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:46: error: ‘e’ was not declared in this scope
     } catch(const std::bad_array_new_length &e) {
                                              ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:133:47: error: expected ‘;’ before ‘)’ token
     } catch(const std::bad_array_new_length &e) {
                                               ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp: In static member function ‘static Tensor* Tensor::load_from_txt(std::ifstream&, char, int)’:
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:45: error: expected unqualified-id before ‘&’ token
     } catch(const std::bad_array_new_length &e) {
                                             ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:45: error: expected ‘)’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:45: error: expected ‘{’ before ‘&’ token
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:46: error: ‘e’ was not declared in this scope
     } catch(const std::bad_array_new_length &e) {
                                              ^
/home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/src/tensor/tensor_serialization.cpp:169:47: error: expected ‘;’ before ‘)’ token
     } catch(const std::bad_array_new_length &e) {
                                               ^
make[2]: *** [CMakeFiles/eddl.dir/src/tensor/tensor_serialization.cpp.o] Error 1
make[1]: *** [CMakeFiles/eddl.dir/all] Error 2
make: *** [all] Error 2

Thank you in advance for your help.
@salvacarrion
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salvacarrion commented Mar 1, 2020 •
edited

Most flags are automatic or have default values:

  • GPU falling back to CPU
  • OpenMP (if available, it'll be on)
  • SHARED_LIB (default)
  • PREFIX_INSTAL...
  • etc
    (You can change them if you want, but is better to let cmake choose their values for you)

But other flags are too agressive and need specific requirements. So I recommend not to use them: BUILD_HPC, MKL
By default they are disabled for compatibility purposes.

More:

  • BUILD_TESTS should be off (i need to update the tests)

@Andrea-Oliveri
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I have tried calling cmake with only these parameters: -DBUILD_TARGET=CPU -DBUILD_SHARED_LIB=ON -DBUILD_PROTOBUF=OFF -DBUILD_EXAMPLES=ON -DCMAKE_INSTALL_PREFIX=/home/oliveri/oliveri/eddl and unfortunately make fails with the same errors.
Here is the output of CMake:

-- The CXX compiler identification is GNU 4.8.5
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMP_CXX: -fopenmp (found version "3.1")
-- Found OpenMP: TRUE (found version "3.1")
-- Found OpenMP, version 3
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7")
-- Looking for C++ include pthread.h
-- Looking for C++ include pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Install path: /home/oliveri/oliveri/eddl
-- ===========================================
-- ===========================================
-- Build type: Release
-- Build target: CPU
-- Build tests: OFF
-- Build examples: ON
-- Build OpenMP: ON
-- Build Protobuf: OFF
-- Build HPC: OFF
-- Use Intel-MKL: OFF
-- C++ compiler: GNU
-- C++ flags:  -DEIGEN_FAST_MATH -pipe
-- C++ flags (release): -O3 -mtune=native
-- C++ flags (debug): -g -Og
-- CUDA Enabled:
-- CUDA flags:
-- ===========================================
-- ===========================================
-- Configuring done
-- Generating done
-- Build files have been written to: /home/oliveri/oliveri/Projet_de_Batchelor/repo/pyeddl/third_party/eddl/build

The output of make is unchanged.

@RParedesPalacios
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rm -rf *
and cmake again

@Andrea-Oliveri
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Already done. I actually delete the whole repository and reclone it at each try, so it's unfortunately not as simple as cleaning the build folder.

@salvacarrion salvacarrion reopened this Mar 1, 2020
@salvacarrion
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salvacarrion commented Mar 1, 2020 •
edited

Try using a more recent version of the GNU compiler (or another). You currently use GNU 4.8.5, so try with g++-9 or clang (for instance)

@RParedesPalacios
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Already done. I actually delete the whole repository and reclone it at each try, so it's unfortunately not as simple as cleaning the build folder.

ok! seems that cold be the compiler version.

@salvacarrion
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@Andrea-Oliveri any news?

@Andrea-Oliveri
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Unfortunately I don't have sudo rights to update the compiler on the CentOS, so the whole process od trying a more recent compiler version is going to take a while. However, knowing that on the Ubuntu machine with a more recent compiler the build process works flawlessly, I think you are right and eddl is just incompatible with too old gcc/g++ versions.
Thank you for your support.

@salvacarrion
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Okay, so I'm gonna close this issue.

Btw, it is possible change the compiler using this cmake flag: -DCMAKE_CXX_COMPILER=/path/to/c++compiler

More: Build options

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