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DeepImageJ-2.1.11
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@carlosuc3m carlosuc3m released this 11 Feb 19:19
· 156 commits to master since this release
2.1.11
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Learn about vigilant mode.

Release of DeepImageJ version 2.1.11.

To download already pretrained models for this version and for more information please go to:
https://deepimagej.github.io/deepimagej/models.html or https://bioimage.io/#/

The main changes with respect to DeepImageJ 1.2.1 are:

  • From Image2image in 2D to image2any: deepImageJ 2.1.10 runs models defined for 3D image processing, image classification or object detection through region proposal networks. It deals with miscellaneous output formats and shapes.
  • GPU support.
  • Compatibility with PyTorch: All PyTorch models stored as TorchScript can be for the first time loaded into ImageJ/Fiji through deepImageJ.
  • New formats for image pre and post-processing: ImageJ macros (.txt/.ijm) and Java code&classes (.jar/.class) are supported and can be combined.
  • Compatibility with the Bioimage Model Zoo🦒: deepImageJ is a consumer of the trained models in the BioImage Model Zoo
  • Addition of a Validation plugin
  • Support of headless mode for ImageJ/Fiji
  • Full support of PyImageJ
  • Add of test feature in DIJ Run

Changes with respect to 2.1.10:

  • Allow fractional offsets (multiples of 0.5) to support stardist
  • Upgrade Pytorch from 1.7 to 1.9

IMPORTANT (only for ImageJ1):

In order to run the plugin in GPU mode, the dependency libtensorflow_jni-1.15.0 has to be substituted by libtensorflow_jni_gpu-1.15.0. There should only be one of those two dependencies installed in the ImageJ1 directory.
DeepImageJ for GPU processing works even if there are is not any GPU available. However, the GPU version DOES NOT WORK on macOS distributions.

Content of DeepImageJ_dependencies_2110.zip:

  • libtensorflow-1.15.0.jar
  • libtensorflow_jni-1.15.0.jar
  • proto-1.15.0.jar
  • protobuf-java-3.5.1.jar
  • junit-4.12.jar
  • hamcrest-core-1.3.jar
  • snakeyaml-1.21.jar
  • slf4j-simple-1.7.26.jar
  • slf4j-api-1.7.25.jar
  • pytorch-native-auto-1.9.1.jar
  • pytorch-engine-0.15.0.jar
  • npy-0.3.3.jar
  • kotlin-stdlib-1.3.72.jar
  • jna-5.3.0.jar
  • imagej-tensorflow-1.1.6.jar
  • gson-2.8.5.jar
  • commons-compress-1.20.jar
  • api-0.15.0.jar
Assets 4