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jax.tree_util.tree_multimap() is deprecated #456
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I've got the same issue. |
I also have the same issue, help welcome! |
Hi, this is just a warning message - you can safely ignore it. We'll fix it (by moving to |
Thank you for getting back to me so fast! Ok that's good info, for some
reason the run still halts every time I try to run the Collab notebook,
usually very close to it finishing section 5. Here is a screenshot of the
run I just tried to complete, please let me know if there is anything I can
do to help or anything I am doing incorrectly. Thanks!
[image: image.png]
…On Thu, May 19, 2022, 2:38 PM Tim Green ***@***.***> wrote:
Hi, this is just a warning message - you can safely ignore it. We'll fix
it (by moving to tree_map) at some point.
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I was able to complete my run without relaxation, still not sure what is preventing the colab notebook from doing the relaxation step, hopefully someone knowledgeable gets a chance to look at the screenshots above |
Hi @Joey305, I get the same error, first, it was the error about the relaxation, I defined run_relax = False and it solved that problem, however now I get the error of "A UTF-8 locale is required. Got ANSI_X3.4-1968". Have you been able to solve that error? Can you help me with this issue? |
Hi Angie, you caught me just as i was about to wrap up my day so i am glad i am able to respond promptly. I have not been able to solve this issue, even when i run the prediction from 3 different computers using different sequences. I originally thought it was an issue with my sequences but when i ran predictions i had previously done and got this same error, i knew it was not a me issue and that (from my deep dive into googling this issue) that for some reason the back end of the software isn't connecting to the drivers that it needs to connect and it is kicking out the predictions right before they finish. I am thinking it might be a ploy by DeepMind/Google to get us to subscribe to Collab Pro because i am sure that it will most likely magically fix my issues if i pay for the service instead of using it for free! Just my two cents at least, whatever its good for! |
Umm Ok, Thank you anyway. I will let you know if I can solve it. |
Are you guys sure all these AMBER-related postings you have added still belong to the initial issue I had posted here in my first note? If not, please delete these or move them to a new thread to keep things organized. |
solved in #630 just replace all tree_utils. becacuse jax moved them. |
I got the follwoing messenge in cell 5 (run alphafold & relax with AMBER):
/usr/local/lib/python3.7/dist-packages/jax/_src/tree_util.py:189: FutureWarning: jax.tree_util.tree_multimap() is deprecated. Please use jax.tree_util.tree_map() instead as a drop-in replacement.
'instead as a drop-in replacement.', FutureWarning)
Any idea what exactly the issue is?
-Michael.
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