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Fix: Correct the stress calculation of OFDFT (#1455)
* <feat>: Add CG method, Truncated-Newton, and line search algorithm and corresponding unittest to source/module_esolver/opt/, these methods will be used in OFDFT later. * Delete opt/opt_DCsrch.cpp. Delete opt/opt_DCsrch.cpp, whose license is different from ABACUS. Later it will be replaced. * <feat> Add input parameters used in OFDFT, including of_kinetic, of_method, of_conv, of_tole, of_tolp. * <feat> Add input parameters `of_kinetic`, `of_method`, `of_conv`, `of_tole`, `of_tolp` to OFDFT. * <feat> Add ESolver_OF.cpp and related codes, they can be compiled succesfully, but cannot get correct results yet. * <feat> Complete spin1 ofdft process. * <feat> Modified variables and fucntions to add SPIN2 OFDFT. * <feat> Add support to SPIN2, but there must be some bugs. Add cal_Force and cal_Stress. * <feat> Add opt_DCsrch.cpp. * <feat> Add support to parallel OFDFT. * fix: 1. When the atoms are far apart, the initial density got by Charge::atomic_rho may have minus elements, which will cause nan in psi=sqrt(rho), so the density is initialized to be uniform in ESolver_OF now. 2. Correct the check of positive difinite in Opt_CG::step_length. 3. Add a check for too large gradient (dE/dthta). * test: Add integrate test 901_OF_OP_truncatedNewton. * test: Add integrate test for OFDFT 901_OF_OP_CG1, 901_OF_OP_CG2, 902_OF_KE_tf * Adjust code structure and comments. * feat: Update Makefile * update Makefile * update /module_deepks/test/CMakeLists.txt: add opt into target_link_libraries. * test: update tests/CASES, add 901_OF_OP_CG1, 901_OF_OP_CG2 and 902_OF_KE_TF * <feat>: Add vW KEDF. But the result is a little different from PROFESS3.0 now, and the stress is not completed. * <feat> Add WT KEDF, correct vW KEDF. Add WT KEDF, but further check is needed. vW KEDF is corrected by multiplying a 2 factor to convert Hartree to Ry. The stress of both of them have not been completed yet. The SPIN2 case is not considered for now. * refactor delete the potential array in kedf_tf, kedf_vw, and kedf_wt to save memory. * <feat> Add the support to TF+vW KEDF. Add four input variables: of_tf_weight, of_vw_weight, of_wt_alpha, and of_wt_beta. * <fix> correct the default value of of_wt_alpha and of_wt_beta, so that WT KEDF can give the same result as PROFESS3.0. * <feat> Add the support to stress of vW and WT KEDF. Add two input parameters of_wt_rho0 and of_hold_rho0. * <test> Add five integrate tests, 902_OF_KE_TF+, 902_OF_KE_WT, 902_OF_KE_vW, 903_WT_HOLD, 903_WT_RHO0. Correct a parameter `mult` in KEDF_WT::get_stress.y * <fix> Fix the bug that of_hold_rho0 won't be set to 1 automaticlly when of_wt_rho0 is not 0. Adjust the parameter used in KEDF_WT::cal_stress to make it easier to read. * <fix> correct the formula of WT kinetic density in KEDF_WT::get_energy_density. * Update Makefile.Objects * modify the input variables of get_energy_density() of KEDF_TF and KEDF_WT * add some annotation, add function ESolver_OF::postprocess * <feat> Add the support to OFDFT MD add a option `of-md` to `calculation`, now OFDFT MD is supported, but more check is still needed. * fix&feat The vW KEDF should be calculated with sqrt(rho), not phi, because phi may contain minus elements. Add the support to OF MD, more check is needed. * fix The high frequency part of ESolver_OF->pdirect are filtered, so that the calculation is more stable. * fix memory leak in KEDF_vW * fix: correct the gga-BLPS OFDFT, add the support to uniform density for PBE exchange in module_xc/xc_funct_exch_gga.cpp and module_xc/xc_functional_gradcorr.cpp. * fix: correct PBE correlation potential for uniform density, in module_xc/xc_funct_corr_gga.cpp. * <fix> Move the initialization of theta, pdirect, pdLdphi into the function preprocess form init. * add the test code of reciprocal potential norm in esolver_of.cpp * <feat> Add support to full planewave FFT in OFDFT calculation, which ignores the ecut while collecting planewaves. Add two input parameters: of_full_pw and of_full_pw_dim. * <fix> when dft_functional != "default", read_blps_pp.cpp won't reset the type of XC, so that we can use PBE of Libxc. * feat: add the support of deltaRhoG and delaRhoR as convergence criterion. They are under test, so are commented out now. * feat: Now ABACUS can read WT KEDF kernel from file. add two input variables of_read_kernel and of_kernel_file. * Add module_esolver/opt into src_pw/test/CMakeLists.txt * Add esolver_of, opt_CG, and opt_DCsrch into source/src_pw/Makefile.Objects * add esolver_of.cpp to src_pw/test/CMakeLists.txt * add kedf_tf.cpp, kedf_vw.cpp, kedf_wt.cpp into src_pw/test/CMakeLists.txt... * fix:fix memory leak in WT KEDF * refactor: move module_esolver/opt/* to module_base, and add unit tests for them. * fix: fix the include bug in opt_CG_test.cpp and opt_TN_test.cpp * fix: fix the include bug in opt_test_tools.cpp * test: Add 22 unittests for module_pw, which assert full_pw version used by OFDFT works well. * fix: add module_pw/test/test5~8 into module_pw/test/CMakeLists.txt. * style: update the annotations in esolver_of.cpp and esolver_of.h, adjust the output information of OFDFT. * style: Adjust the code structure and annotations in module_esolver/kedf_*. * style: modify the src_io/print_info.cpp so that OFDFT calculation will output similar info. to KSDFT. * <docs>: Update docs about OFDFT * <fix>: add module_base/opt* into module_base/Makefile.Objects and /tests/module_base/CMakeLists.txt * <test>: Add 21 integrate tests for OFDFT * test: correct test5-1-1 of module_pw * fix: fix memory leak in opt_CG.cpp * Correct some annotations. * <fix> Correct the stress of OFDFT Correct the stress calculated by OFDFT by adding src_pw/of_stress_pw.cpp. Modify corresponding integrate tests. * merge from deepmodeling develop * <style> Assert that full_pw_dim only works when full_pw=true. * <test> remove the stress test from `904_OF_CO_Energy` The test `904_OF_CO_Energy` can be passed on my workstation with either gnu or intel complier, I don't know why there are still problems in online test. Whatever, the little stress difference between parallel and serial calculation also occurs in `PROFESS3.0`, and the range in PROFESS3.0 (0.0015 GPa) is larger than ABACUS (0.00013 GPa), so I think it's safe to turn off the stress test in this test. The little stress difference seems caused by the difference between optimization trajectory, so that the more optimization steps there are, the larger stress difference will occur. As a result, the `904_OF_CO_*` take more strict convergence criterion, leading to more steps and larger stress difference, while `902_*` and `903_*` give less stress difference and are able to pass stress test.
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#include "./of_stress_pw.h" | ||
#include "../module_base/timer.h" | ||
#include "global.h" | ||
#include "module_vdw/vdw.h" | ||
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// Since the kinetic stress of OFDFT is calculated by kinetic functionals in esolver_of.cpp, here we regard it as an input variable. | ||
void OF_Stress_PW::cal_stress(ModuleBase::matrix& sigmatot, ModuleBase::matrix& kinetic_stress, const psi::Psi<complex<double>>* psi_in) | ||
{ | ||
ModuleBase::TITLE("OF_Stress_PW","cal_stress"); | ||
ModuleBase::timer::tick("OF_Stress_PW","cal_stress"); | ||
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// total stress | ||
sigmatot.create(3,3); | ||
ModuleBase::matrix sigmaxc; | ||
// exchange-correlation stress | ||
sigmaxc.create(3,3); | ||
// hartree stress | ||
ModuleBase::matrix sigmahar; | ||
sigmahar.create(3,3); | ||
// electron kinetic stress | ||
ModuleBase::matrix sigmakin; | ||
sigmakin.create(3,3); | ||
// local pseudopotential stress | ||
ModuleBase::matrix sigmaloc; | ||
sigmaloc.create(3,3); | ||
// non-local pseudopotential stress | ||
ModuleBase::matrix sigmanl; | ||
sigmanl.create(3,3); | ||
// Ewald stress | ||
ModuleBase::matrix sigmaewa; | ||
sigmaewa.create(3,3); | ||
// non-linear core correction stress | ||
ModuleBase::matrix sigmaxcc; | ||
sigmaxcc.create(3,3); | ||
// vdw stress | ||
ModuleBase::matrix sigmavdw; | ||
sigmavdw.create(3,3); | ||
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for(int i=0;i<3;i++) | ||
{ | ||
for(int j=0;j<3;j++) | ||
{ | ||
sigmatot(i,j) = 0.0; | ||
sigmaxc(i,j) = 0.0; | ||
sigmahar(i,j) = 0.0; | ||
//kinetic contribution | ||
sigmakin(i,j) = kinetic_stress(i,j); | ||
sigmaloc(i,j) = 0.0; | ||
sigmanl(i,j) = 0.0; | ||
sigmaewa(i,j) = 0.0; | ||
sigmaxcc(i,j) = 0.0; | ||
sigmavdw(i,j) = 0.0; | ||
} | ||
} | ||
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//hartree contribution | ||
stress_har(sigmahar, GlobalC::rhopw, 1); | ||
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//ewald contribution | ||
stress_ewa(sigmaewa, GlobalC::rhopw, 1); | ||
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//xc contribution: add gradient corrections(non diagonal) | ||
for(int i=0;i<3;i++) | ||
{ | ||
sigmaxc(i,i) = - (GlobalC::en.etxc - GlobalC::en.vtxc) / GlobalC::ucell.omega; | ||
} | ||
stress_gga(sigmaxc); | ||
if(XC_Functional::get_func_type() == 3) stress_mgga(sigmaxc, psi_in); | ||
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//local contribution | ||
stress_loc(sigmaloc, GlobalC::rhopw, 1); | ||
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//nlcc | ||
stress_cc(sigmaxcc, GlobalC::rhopw, 1); | ||
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//nonlocal | ||
stress_nl(sigmanl, psi_in); | ||
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//vdw term | ||
stress_vdw(sigmavdw); | ||
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for(int ipol=0;ipol<3;ipol++) | ||
{ | ||
for(int jpol=0;jpol<3;jpol++) | ||
{ | ||
sigmatot(ipol,jpol) = sigmakin(ipol,jpol) | ||
+ sigmahar(ipol,jpol) | ||
+ sigmanl(ipol,jpol) | ||
+ sigmaxc(ipol,jpol) | ||
+ sigmaxcc(ipol,jpol) | ||
+ sigmaewa(ipol,jpol) | ||
+ sigmaloc(ipol,jpol) | ||
+ sigmavdw(ipol,jpol); | ||
} | ||
} | ||
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if(ModuleSymmetry::Symmetry::symm_flag) | ||
{ | ||
GlobalC::symm.stress_symmetry(sigmatot, GlobalC::ucell); | ||
} | ||
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bool ry = false; | ||
this->printstress_total(sigmatot, ry); | ||
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if(GlobalV::TEST_STRESS) | ||
{ | ||
GlobalV::ofs_running << "\n PARTS OF STRESS: " << std::endl; | ||
GlobalV::ofs_running << std::setiosflags(ios::showpos); | ||
GlobalV::ofs_running << std::setiosflags(ios::fixed) << std::setprecision(10) << std::endl; | ||
this->print_stress("KINETIC STRESS",sigmakin,GlobalV::TEST_STRESS,ry); | ||
this->print_stress("LOCAL STRESS",sigmaloc,GlobalV::TEST_STRESS,ry); | ||
this->print_stress("HARTREE STRESS",sigmahar,GlobalV::TEST_STRESS,ry); | ||
this->print_stress("NON-LOCAL STRESS",sigmanl,GlobalV::TEST_STRESS,ry); | ||
this->print_stress("XC STRESS",sigmaxc,GlobalV::TEST_STRESS,ry); | ||
this->print_stress("EWALD STRESS",sigmaewa,GlobalV::TEST_STRESS,ry); | ||
this->print_stress("NLCC STRESS",sigmaxcc,GlobalV::TEST_STRESS,ry); | ||
this->print_stress("TOTAL STRESS",sigmatot,GlobalV::TEST_STRESS,ry); | ||
} | ||
ModuleBase::timer::tick("OF_Stress_PW","cal_stress"); | ||
return; | ||
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} | ||
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void OF_Stress_PW::stress_vdw(ModuleBase::matrix& sigma) | ||
{ | ||
auto vdw_solver = vdw::make_vdw(GlobalC::ucell, INPUT); | ||
if (vdw_solver != nullptr) | ||
{ | ||
sigma = vdw_solver->get_stress().to_matrix(); | ||
} | ||
return; | ||
} |
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#ifndef OF_STRESS_PW_H | ||
#define OF_STRESS_PW_H | ||
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#include "stress_func.h" | ||
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class OF_Stress_PW: public Stress_Func | ||
{ | ||
public : | ||
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OF_Stress_PW (){}; | ||
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//calculate the stress in OFDFT | ||
void cal_stress(ModuleBase::matrix& sigmatot, ModuleBase::matrix& kinetic_stress, const psi::Psi<complex<double>>* psi_in=nullptr); | ||
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protected : | ||
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//call the vdw stress | ||
void stress_vdw(ModuleBase::matrix& smearing_sigma); //force and stress calculated in vdw together. | ||
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}; | ||
#endif |
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totaltimeref 0.26886 | ||
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@@ -1,5 +1,5 @@ | ||
etotref -60.4554400751161936 | ||
etotperatomref -60.4554400751 | ||
totalforceref 0.000000 | ||
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totaltimeref +0.22093 | ||
totalstressref 352.986411 | ||
totaltimeref +0.21459 |
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Test the energy, force, and stress of `WT + 0.5 * TF + vW`, with of_tf_weight=0.5, symmetry=on | ||
Test the energy, force, and stress of `WT + 1.1 * TF + vW`, with of_tf_weight=1.1, symmetry=on |
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totaltimeref +0.30996 |
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