fix bohrium remote root (#287)

Signed-off-by: Jinzhe Zeng <jinzhe.zeng@rutgers.edu> Signed-off-by: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>
deepmodeling · Nov 29, 2022 · 31b81dc · 31b81dc
1 parent bcb105d
commit 31b81dc
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diff --git a/dpdispatcher/dp_cloud_server_context.py b/dpdispatcher/dp_cloud_server_context.py
@@ -67,7 +67,7 @@ def load_from_dict(cls, context_dict):
     def bind_submission(self, submission):
         self.submission = submission
         self.local_root = os.path.join(self.temp_local_root, submission.work_base)
-        self.remote_root = '$(pwd)'
+        self.remote_root = '.'
 
         self.submission_hash = submission.submission_hash
 

diff --git a/dpdispatcher/machine.py b/dpdispatcher/machine.py
@@ -18,7 +18,7 @@
 """
 
 script_env_template="""
-REMOTE_ROOT={remote_root}
+REMOTE_ROOT=$(readlink -f {remote_root})
 echo 0 > $REMOTE_ROOT/{flag_if_job_task_fail}
 test $? -ne 0 && exit 1