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pip install deeppavlov fails for python 3.7.3 because of old scikit-learn #908

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sld opened this issue Jun 29, 2019 · 2 comments
Closed

pip install deeppavlov fails for python 3.7.3 because of old scikit-learn #908

sld opened this issue Jun 29, 2019 · 2 comments

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@sld
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sld commented Jun 29, 2019

pip install deeppavlov fails on scikit-learn:

ubuntu@ip-172-31-26-238:~/alexa_test$ pip install deeppavlov
Collecting deeppavlov
  Using cached https://files.pythonhosted.org/packages/03/4f/1f73825653f388ead9a9ea2f46cad51c92bd84a899ebf983906013e14d1c/deeppavlov-0.4.0-py3-none-any.whl
Requirement already satisfied: flask-cors==3.0.6 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (3.0.6)
Requirement already satisfied: keras==2.2.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (2.2.0)
Requirement already satisfied: Cython==0.28.5 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (0.28.5)
Requirement already satisfied: pandas==0.23.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (0.23.1)
Requirement already satisfied: flask==1.0.2 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (1.0.2)
Requirement already satisfied: h5py==2.8.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (2.8.0)
Requirement already satisfied: pymorphy2-dicts-ru in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (2.4.404381.4453942)
Requirement already satisfied: numpy==1.14.5 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (1.14.5)
Requirement already satisfied: scipy==1.1.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (1.1.0)
Requirement already satisfied: pytelegrambotapi==3.5.2 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (3.5.2)
Requirement already satisfied: tqdm==4.23.4 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (4.23.4)
Requirement already satisfied: nltk==3.2.5 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (3.2.5)
Collecting scikit-learn==0.19.1 (from deeppavlov)
  Using cached https://files.pythonhosted.org/packages/f5/2c/5edf2488897cad4fb8c4ace86369833552615bf264460ae4ef6e1f258982/scikit-learn-0.19.1.tar.gz
Requirement already satisfied: pymorphy2==0.8 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (0.8)
Requirement already satisfied: overrides==1.9 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (1.9)
Requirement already satisfied: fuzzywuzzy==0.16.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (0.16.0)
Requirement already satisfied: pyopenssl==18.0.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (18.0.0)
Requirement already satisfied: rusenttokenize==0.0.4 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (0.0.4)
Requirement already satisfied: flasgger==0.9.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (0.9.1)
Requirement already satisfied: requests==2.19.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from deeppavlov) (2.19.1)
Requirement already satisfied: Six in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from flask-cors==3.0.6->deeppavlov) (1.12.0)
Requirement already satisfied: pyyaml in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from keras==2.2.0->deeppavlov) (5.1.1)
Requirement already satisfied: keras-applications==1.0.2 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from keras==2.2.0->deeppavlov) (1.0.2)
Requirement already satisfied: keras-preprocessing==1.0.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from keras==2.2.0->deeppavlov) (1.0.1)
Requirement already satisfied: python-dateutil>=2.5.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from pandas==0.23.1->deeppavlov) (2.8.0)
Requirement already satisfied: pytz>=2011k in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from pandas==0.23.1->deeppavlov) (2019.1)
Requirement already satisfied: Jinja2>=2.10 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from flask==1.0.2->deeppavlov) (2.10.1)
Requirement already satisfied: click>=5.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from flask==1.0.2->deeppavlov) (7.0)
Requirement already satisfied: itsdangerous>=0.24 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from flask==1.0.2->deeppavlov) (1.1.0)
Requirement already satisfied: Werkzeug>=0.14 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from flask==1.0.2->deeppavlov) (0.15.4)
Requirement already satisfied: dawg-python>=0.7 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from pymorphy2==0.8->deeppavlov) (0.7.2)
Requirement already satisfied: pymorphy2-dicts<3.0,>=2.4 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from pymorphy2==0.8->deeppavlov) (2.4.393442.3710985)
Requirement already satisfied: docopt>=0.6 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from pymorphy2==0.8->deeppavlov) (0.6.2)
Requirement already satisfied: cryptography>=2.2.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from pyopenssl==18.0.0->deeppavlov) (2.7)
Requirement already satisfied: mistune in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from flasgger==0.9.1->deeppavlov) (0.8.4)
Requirement already satisfied: jsonschema>=2.5.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from flasgger==0.9.1->deeppavlov) (3.0.1)
Requirement already satisfied: chardet<3.1.0,>=3.0.2 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from requests==2.19.1->deeppavlov) (3.0.4)
Requirement already satisfied: certifi>=2017.4.17 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from requests==2.19.1->deeppavlov) (2019.6.16)
Requirement already satisfied: urllib3<1.24,>=1.21.1 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from requests==2.19.1->deeppavlov) (1.23)
Requirement already satisfied: idna<2.8,>=2.5 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from requests==2.19.1->deeppavlov) (2.7)
Requirement already satisfied: MarkupSafe>=0.23 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from Jinja2>=2.10->flask==1.0.2->deeppavlov) (1.1.1)
Requirement already satisfied: asn1crypto>=0.21.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from cryptography>=2.2.1->pyopenssl==18.0.0->deeppavlov) (0.24.0)
Requirement already satisfied: cffi!=1.11.3,>=1.8 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from cryptography>=2.2.1->pyopenssl==18.0.0->deeppavlov) (1.12.3)
Requirement already satisfied: pyrsistent>=0.14.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from jsonschema>=2.5.1->flasgger==0.9.1->deeppavlov) (0.15.2)
Requirement already satisfied: setuptools in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from jsonschema>=2.5.1->flasgger==0.9.1->deeppavlov) (40.8.0)
Requirement already satisfied: attrs>=17.4.0 in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from jsonschema>=2.5.1->flasgger==0.9.1->deeppavlov) (19.1.0)
Requirement already satisfied: pycparser in /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages (from cffi!=1.11.3,>=1.8->cryptography>=2.2.1->pyopenssl==18.0.0->deeppavlov) (2.19)
Installing collected packages: scikit-learn, deeppavlov
  Found existing installation: scikit-learn 0.21.2
    Uninstalling scikit-learn-0.21.2:
      Successfully uninstalled scikit-learn-0.21.2
  Running setup.py install for scikit-learn ... error
    ERROR: Complete output from command /home/ubuntu/.pyenv/versions/3.7.3/bin/python3.7 -u -c 'import setuptools, tokenize;__file__='"'"'/tmp/pip-install-dc3wq6pv/scikit-learn/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-08gkrgsf/install-record.txt --single-version-externally-managed --compile:
    ERROR: Partial import of sklearn during the build process.
    blas_opt_info:
    blas_mkl_info:
    customize UnixCCompiler
      libraries mkl_rt not found in ['/home/ubuntu/.pyenv/versions/3.7.3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE

    blis_info:
    customize UnixCCompiler
      libraries blis not found in ['/home/ubuntu/.pyenv/versions/3.7.3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE

    openblas_info:
    customize UnixCCompiler
    customize UnixCCompiler
      libraries openblas not found in ['/home/ubuntu/.pyenv/versions/3.7.3/lib', '/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE

    atlas_3_10_blas_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries tatlas not found in ['/home/ubuntu/.pyenv/versions/3.7.3/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE

    atlas_3_10_blas_info:
    customize UnixCCompiler
      libraries satlas not found in ['/home/ubuntu/.pyenv/versions/3.7.3/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE

    atlas_blas_threads_info:
    Setting PTATLAS=ATLAS
    customize UnixCCompiler
      libraries ptf77blas,ptcblas,atlas not found in ['/home/ubuntu/.pyenv/versions/3.7.3/lib', '/usr/local/lib', '/usr/lib/atlas-base', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE

    atlas_blas_info:
    customize UnixCCompiler
    get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']'
    customize Gnu95FCompiler
    Found executable /usr/bin/gfortran
    customize Gnu95FCompiler
    customize Gnu95FCompiler using config
    compiling '_configtest.c':

    /* This file is generated from numpy/distutils/system_info.py */
    void ATL_buildinfo(void);
    int main(void) {
      ATL_buildinfo();
      return 0;
    }

    C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC

    compile options: '-c'
    gcc: _configtest.c
    gcc -pthread _configtest.o -L/usr/lib/atlas-base -lf77blas -lcblas -latlas -o _configtest
    ATLAS version 3.10.2 built by buildd on Mon Nov 23 23:12:07 UTC 2015:
       UNAME    : Linux lgw01-49 3.19.0-33-generic #38 14.04.1-Ubuntu SMP Fri Nov 6 18:17:28 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
       INSTFLG  : -1 0 -a 1 -l 1
       ARCHDEFS : -DATL_OS_Linux -DATL_ARCH_x86SSE2 -DATL_CPUMHZ=2095 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664
       F2CDEFS  : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
       CACHEEDGE: 1048576
       F77      : /usr/bin/gfortran, version GNU Fortran (Ubuntu 5.2.1-24ubuntu3) 5.2.1 20151121
       F77FLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
       SMC      : /usr/bin/gcc, version gcc (Ubuntu 5.2.1-24ubuntu3) 5.2.1 20151121
       SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
       SKC      : /usr/bin/gcc, version gcc (Ubuntu 5.2.1-24ubuntu3) 5.2.1 20151121
       SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -O2 -msse2 -fPIC -m64
    success!
    removing: _configtest.c _configtest.o _configtest
    customize UnixCCompiler
    customize UnixCCompiler
      FOUND:
        include_dirs = ['/usr/include/atlas']
        language = c
        define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"3.10.2\\""')]
        libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
        library_dirs = ['/usr/lib/atlas-base']

      FOUND:
        include_dirs = ['/usr/include/atlas']
        language = c
        define_macros = [('HAVE_CBLAS', None), ('ATLAS_INFO', '"\\"3.10.2\\""')]
        libraries = ['f77blas', 'cblas', 'atlas', 'f77blas', 'cblas']
        library_dirs = ['/usr/lib/atlas-base']

    running install
    running build
    running config_cc
    unifing config_cc, config, build_clib, build_ext, build commands --compiler options
    running config_fc
    unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
    running build_src
    build_src
    building library "libsvm-skl" sources
    building extension "sklearn.__check_build._check_build" sources
    building extension "sklearn.cluster._dbscan_inner" sources
    building extension "sklearn.cluster._hierarchical" sources
    building extension "sklearn.cluster._k_means_elkan" sources
    building extension "sklearn.cluster._k_means" sources
    building extension "sklearn.datasets._svmlight_format" sources
    building extension "sklearn.decomposition._online_lda" sources
    building extension "sklearn.decomposition.cdnmf_fast" sources
    building extension "sklearn.ensemble._gradient_boosting" sources
    building extension "sklearn.feature_extraction._hashing" sources
    building extension "sklearn.manifold._utils" sources
    building extension "sklearn.manifold._barnes_hut_tsne" sources
    building extension "sklearn.metrics.pairwise_fast" sources
    building extension "sklearn.metrics/cluster.expected_mutual_info_fast" sources
    building extension "sklearn.neighbors.ball_tree" sources
    building extension "sklearn.neighbors.kd_tree" sources
    building extension "sklearn.neighbors.dist_metrics" sources
    building extension "sklearn.neighbors.typedefs" sources
    building extension "sklearn.neighbors.quad_tree" sources
    building extension "sklearn.tree._tree" sources
    building extension "sklearn.tree._splitter" sources
    building extension "sklearn.tree._criterion" sources
    building extension "sklearn.tree._utils" sources
    building extension "sklearn.svm.libsvm" sources
    building extension "sklearn.svm.liblinear" sources
    building extension "sklearn.svm.libsvm_sparse" sources
    building extension "sklearn._isotonic" sources
    building extension "sklearn.linear_model.cd_fast" sources
    building extension "sklearn.linear_model.sgd_fast" sources
    building extension "sklearn.linear_model.sag_fast" sources
    building extension "sklearn.utils.sparsefuncs_fast" sources
    building extension "sklearn.utils.arrayfuncs" sources
    building extension "sklearn.utils.murmurhash" sources
    building extension "sklearn.utils.lgamma" sources
    building extension "sklearn.utils.graph_shortest_path" sources
    building extension "sklearn.utils.fast_dict" sources
    building extension "sklearn.utils.seq_dataset" sources
    building extension "sklearn.utils.weight_vector" sources
    building extension "sklearn.utils._random" sources
    building extension "sklearn.utils._logistic_sigmoid" sources
    building data_files sources
    build_src: building npy-pkg config files
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.7
    creating build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/__init__.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/exceptions.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/multioutput.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/multiclass.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/calibration.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/setup.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/kernel_ridge.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/dummy.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/discriminant_analysis.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/grid_search.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/base.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/pipeline.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/cross_validation.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/random_projection.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/isotonic.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/kernel_approximation.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/learning_curve.py -> build/lib.linux-x86_64-3.7/sklearn
    copying sklearn/naive_bayes.py -> build/lib.linux-x86_64-3.7/sklearn
    creating build/lib.linux-x86_64-3.7/sklearn/__check_build
    copying sklearn/__check_build/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/__check_build
    copying sklearn/__check_build/setup.py -> build/lib.linux-x86_64-3.7/sklearn/__check_build
    creating build/lib.linux-x86_64-3.7/sklearn/_build_utils
    copying sklearn/_build_utils/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/_build_utils
    creating build/lib.linux-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/empirical_covariance_.py -> build/lib.linux-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/shrunk_covariance_.py -> build/lib.linux-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/graph_lasso_.py -> build/lib.linux-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/robust_covariance.py -> build/lib.linux-x86_64-3.7/sklearn/covariance
    copying sklearn/covariance/outlier_detection.py -> build/lib.linux-x86_64-3.7/sklearn/covariance
    creating build/lib.linux-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/test_covariance.py -> build/lib.linux-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/test_robust_covariance.py -> build/lib.linux-x86_64-3.7/sklearn/covariance/tests
    copying sklearn/covariance/tests/test_graph_lasso.py -> build/lib.linux-x86_64-3.7/sklearn/covariance/tests
    creating build/lib.linux-x86_64-3.7/sklearn/cross_decomposition
    copying sklearn/cross_decomposition/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/cross_decomposition
    copying sklearn/cross_decomposition/cca_.py -> build/lib.linux-x86_64-3.7/sklearn/cross_decomposition
    copying sklearn/cross_decomposition/pls_.py -> build/lib.linux-x86_64-3.7/sklearn/cross_decomposition
    creating build/lib.linux-x86_64-3.7/sklearn/cross_decomposition/tests
    copying sklearn/cross_decomposition/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/cross_decomposition/tests
    copying sklearn/cross_decomposition/tests/test_pls.py -> build/lib.linux-x86_64-3.7/sklearn/cross_decomposition/tests
    creating build/lib.linux-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/univariate_selection.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/mutual_info_.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/variance_threshold.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/from_model.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/rfe.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection
    copying sklearn/feature_selection/base.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection
    creating build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_variance_threshold.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_feature_select.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_base.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_chi2.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_from_model.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
    copying sklearn/feature_selection/tests/test_mutual_info.py -> build/lib.linux-x86_64-3.7/sklearn/feature_selection/tests
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    creating build/lib.linux-x86_64-3.7/sklearn/gaussian_process
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    creating build/lib.linux-x86_64-3.7/sklearn/gaussian_process/tests
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    creating build/lib.linux-x86_64-3.7/sklearn/semi_supervised
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    creating build/lib.linux-x86_64-3.7/sklearn/semi_supervised/tests
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    creating build/lib.linux-x86_64-3.7/sklearn/datasets
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    creating build/lib.linux-x86_64-3.7/sklearn/datasets/tests
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    creating build/lib.linux-x86_64-3.7/sklearn/decomposition/tests
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    creating build/lib.linux-x86_64-3.7/sklearn/ensemble
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    creating build/lib.linux-x86_64-3.7/sklearn/ensemble/tests
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    creating build/lib.linux-x86_64-3.7/sklearn/externals
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    creating build/lib.linux-x86_64-3.7/sklearn/feature_extraction/tests
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    creating build/lib.linux-x86_64-3.7/sklearn/manifold
    copying sklearn/manifold/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/manifold
    copying sklearn/manifold/t_sne.py -> build/lib.linux-x86_64-3.7/sklearn/manifold
    copying sklearn/manifold/isomap.py -> build/lib.linux-x86_64-3.7/sklearn/manifold
    copying sklearn/manifold/locally_linear.py -> build/lib.linux-x86_64-3.7/sklearn/manifold
    copying sklearn/manifold/setup.py -> build/lib.linux-x86_64-3.7/sklearn/manifold
    copying sklearn/manifold/spectral_embedding_.py -> build/lib.linux-x86_64-3.7/sklearn/manifold
    copying sklearn/manifold/mds.py -> build/lib.linux-x86_64-3.7/sklearn/manifold
    creating build/lib.linux-x86_64-3.7/sklearn/manifold/tests
    copying sklearn/manifold/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/manifold/tests
    copying sklearn/manifold/tests/test_mds.py -> build/lib.linux-x86_64-3.7/sklearn/manifold/tests
    copying sklearn/manifold/tests/test_t_sne.py -> build/lib.linux-x86_64-3.7/sklearn/manifold/tests
    copying sklearn/manifold/tests/test_isomap.py -> build/lib.linux-x86_64-3.7/sklearn/manifold/tests
    copying sklearn/manifold/tests/test_spectral_embedding.py -> build/lib.linux-x86_64-3.7/sklearn/manifold/tests
    copying sklearn/manifold/tests/test_locally_linear.py -> build/lib.linux-x86_64-3.7/sklearn/manifold/tests
    creating build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/regression.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/ranking.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/classification.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/setup.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/base.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/pairwise.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    copying sklearn/metrics/scorer.py -> build/lib.linux-x86_64-3.7/sklearn/metrics
    creating build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_pairwise.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_classification.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_common.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_ranking.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_score_objects.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    copying sklearn/metrics/tests/test_regression.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/tests
    creating build/lib.linux-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/setup.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/bicluster.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/unsupervised.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster
    copying sklearn/metrics/cluster/supervised.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster
    creating build/lib.linux-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/test_supervised.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/test_bicluster.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster/tests
    copying sklearn/metrics/cluster/tests/test_unsupervised.py -> build/lib.linux-x86_64-3.7/sklearn/metrics/cluster/tests
    creating build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/regression.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/classification.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/kde.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/setup.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/lof.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/base.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/unsupervised.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/nearest_centroid.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/approximate.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    copying sklearn/neighbors/graph.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors
    creating build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_kde.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_lof.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_neighbors.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_nearest_centroid.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_dist_metrics.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_kd_tree.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_ball_tree.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_quad_tree.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    copying sklearn/neighbors/tests/test_approximate.py -> build/lib.linux-x86_64-3.7/sklearn/neighbors/tests
    creating build/lib.linux-x86_64-3.7/sklearn/tree
    copying sklearn/tree/tree.py -> build/lib.linux-x86_64-3.7/sklearn/tree
    copying sklearn/tree/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/tree
    copying sklearn/tree/setup.py -> build/lib.linux-x86_64-3.7/sklearn/tree
    copying sklearn/tree/export.py -> build/lib.linux-x86_64-3.7/sklearn/tree
    creating build/lib.linux-x86_64-3.7/sklearn/tree/tests
    copying sklearn/tree/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/tree/tests
    copying sklearn/tree/tests/test_export.py -> build/lib.linux-x86_64-3.7/sklearn/tree/tests
    copying sklearn/tree/tests/test_tree.py -> build/lib.linux-x86_64-3.7/sklearn/tree/tests
    creating build/lib.linux-x86_64-3.7/sklearn/svm
    copying sklearn/svm/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/svm
    copying sklearn/svm/bounds.py -> build/lib.linux-x86_64-3.7/sklearn/svm
    copying sklearn/svm/classes.py -> build/lib.linux-x86_64-3.7/sklearn/svm
    copying sklearn/svm/setup.py -> build/lib.linux-x86_64-3.7/sklearn/svm
    copying sklearn/svm/base.py -> build/lib.linux-x86_64-3.7/sklearn/svm
    creating build/lib.linux-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/test_svm.py -> build/lib.linux-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/test_sparse.py -> build/lib.linux-x86_64-3.7/sklearn/svm/tests
    copying sklearn/svm/tests/test_bounds.py -> build/lib.linux-x86_64-3.7/sklearn/svm/tests
    creating build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/huber.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/coordinate_descent.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/passive_aggressive.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/perceptron.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/least_angle.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/ridge.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/ransac.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/omp.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/setup.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/logistic.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/randomized_l1.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/base.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/sag.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/stochastic_gradient.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/bayes.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    copying sklearn/linear_model/theil_sen.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model
    creating build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_randomized_l1.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_sgd.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_least_angle.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_passive_aggressive.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_base.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_ransac.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_bayes.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_theil_sen.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_sparse_coordinate_descent.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_coordinate_descent.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_perceptron.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_sag.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_huber.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_ridge.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_logistic.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    copying sklearn/linear_model/tests/test_omp.py -> build/lib.linux-x86_64-3.7/sklearn/linear_model/tests
    creating build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/sparsefuncs.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/metaestimators.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/linear_assignment_.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/multiclass.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/optimize.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/random.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/estimator_checks.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/extmath.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/class_weight.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/mocking.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/setup.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/fixes.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/bench.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/arpack.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/stats.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/_scipy_sparse_lsqr_backport.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/testing.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/validation.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/graph.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    copying sklearn/utils/deprecation.py -> build/lib.linux-x86_64-3.7/sklearn/utils
    creating build/lib.linux-x86_64-3.7/sklearn/utils/sparsetools
    copying sklearn/utils/sparsetools/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/utils/sparsetools
    copying sklearn/utils/sparsetools/setup.py -> build/lib.linux-x86_64-3.7/sklearn/utils/sparsetools
    creating build/lib.linux-x86_64-3.7/sklearn/utils/sparsetools/tests
    copying sklearn/utils/sparsetools/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/utils/sparsetools/tests
    creating build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_testing.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_class_weight.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_random.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_multiclass.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_bench.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_validation.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_metaestimators.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_stats.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_murmurhash.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_fast_dict.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_estimator_checks.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_shortest_path.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_sparsefuncs.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_seq_dataset.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_fixes.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_linear_assignment.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_optimize.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_graph.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_utils.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_extmath.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    copying sklearn/utils/tests/test_deprecation.py -> build/lib.linux-x86_64-3.7/sklearn/utils/tests
    creating build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/__init__.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_docstring_parameters.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_config.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_dummy.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_cross_validation.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_pipeline.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_multiclass.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_isotonic.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_calibration.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_grid_search.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_init.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_kernel_approximation.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_metaestimators.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_base.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_check_build.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_common.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_discriminant_analysis.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_learning_curve.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_naive_bayes.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_multioutput.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_kernel_ridge.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    copying sklearn/tests/test_random_projection.py -> build/lib.linux-x86_64-3.7/sklearn/tests
    running build_clib
    customize UnixCCompiler
    customize UnixCCompiler using build_clib
    building 'libsvm-skl' library
    compiling C++ sources
    C compiler: g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC

    creating build/temp.linux-x86_64-3.7
    creating build/temp.linux-x86_64-3.7/sklearn
    creating build/temp.linux-x86_64-3.7/sklearn/svm
    creating build/temp.linux-x86_64-3.7/sklearn/svm/src
    creating build/temp.linux-x86_64-3.7/sklearn/svm/src/libsvm
    compile options: '-I/home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -c'
    g++: sklearn/svm/src/libsvm/libsvm_template.cpp
    ar: adding 1 object files to build/temp.linux-x86_64-3.7/liblibsvm-skl.a
    running build_ext
    customize UnixCCompiler
    customize UnixCCompiler using build_ext
    resetting extension 'sklearn.svm.liblinear' language from 'c' to 'c++'.
    customize UnixCCompiler
    customize UnixCCompiler using build_ext
    building 'sklearn.__check_build._check_build' extension
    compiling C sources
    C compiler: gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC

    creating build/temp.linux-x86_64-3.7/sklearn/__check_build
    compile options: '-I/home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -I/home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -I/home/ubuntu/.pyenv/versions/3.7.3/include/python3.7m -c'
    gcc: sklearn/__check_build/_check_build.c
    gcc -pthread -shared -L/home/ubuntu/.pyenv/versions/3.7.3/lib -L/home/ubuntu/.pyenv/versions/3.7.3/lib build/temp.linux-x86_64-3.7/sklearn/__check_build/_check_build.o -Lbuild/temp.linux-x86_64-3.7 -o build/lib.linux-x86_64-3.7/sklearn/__check_build/_check_build.cpython-37m-x86_64-linux-gnu.so
    building 'sklearn.cluster._dbscan_inner' extension
    compiling C++ sources
    C compiler: g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC

    creating build/temp.linux-x86_64-3.7/sklearn/cluster
    compile options: '-I/home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -I/home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -I/home/ubuntu/.pyenv/versions/3.7.3/include/python3.7m -c'
    g++: sklearn/cluster/_dbscan_inner.cpp
    In file included from /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
                     from /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                     from /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                     from sklearn/cluster/_dbscan_inner.cpp:514:
    /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
     #warning "Using deprecated NumPy API, disable it by " \
      ^
    sklearn/cluster/_dbscan_inner.cpp: In function ‘void __Pyx__ExceptionSave(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
    sklearn/cluster/_dbscan_inner.cpp:5960:21: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         *type = tstate->exc_type;
                         ^
    sklearn/cluster/_dbscan_inner.cpp:5961:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         *value = tstate->exc_value;
                          ^
    sklearn/cluster/_dbscan_inner.cpp:5962:19: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         *tb = tstate->exc_traceback;
                       ^
    sklearn/cluster/_dbscan_inner.cpp: In function ‘void __Pyx__ExceptionReset(PyThreadState*, PyObject*, PyObject*, PyObject*)’:
    sklearn/cluster/_dbscan_inner.cpp:5969:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tmp_type = tstate->exc_type;
                            ^
    sklearn/cluster/_dbscan_inner.cpp:5970:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tmp_value = tstate->exc_value;
                             ^
    sklearn/cluster/_dbscan_inner.cpp:5971:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tmp_tb = tstate->exc_traceback;
                          ^
    sklearn/cluster/_dbscan_inner.cpp:5972:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tstate->exc_type = type;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:5973:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tstate->exc_value = value;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:5974:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tstate->exc_traceback = tb;
                 ^
    sklearn/cluster/_dbscan_inner.cpp: In function ‘int __Pyx__GetException(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
    sklearn/cluster/_dbscan_inner.cpp:6029:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tmp_type = tstate->exc_type;
                            ^
    sklearn/cluster/_dbscan_inner.cpp:6030:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tmp_value = tstate->exc_value;
                             ^
    sklearn/cluster/_dbscan_inner.cpp:6031:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tmp_tb = tstate->exc_traceback;
                          ^
    sklearn/cluster/_dbscan_inner.cpp:6032:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tstate->exc_type = local_type;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:6033:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tstate->exc_value = local_value;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:6034:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tstate->exc_traceback = local_tb;
                 ^
    In file included from /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
                     from /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
                     from /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                     from sklearn/cluster/_dbscan_inner.cpp:514:
    /home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
     #warning "Using deprecated NumPy API, disable it by " \
      ^
    sklearn/cluster/_dbscan_inner.cpp: In function ‘void __Pyx__ExceptionSave(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
    sklearn/cluster/_dbscan_inner.cpp:5960:21: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         *type = tstate->exc_type;
                         ^
    sklearn/cluster/_dbscan_inner.cpp:5961:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         *value = tstate->exc_value;
                          ^
    sklearn/cluster/_dbscan_inner.cpp:5962:19: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         *tb = tstate->exc_traceback;
                       ^
    sklearn/cluster/_dbscan_inner.cpp: In function ‘void __Pyx__ExceptionReset(PyThreadState*, PyObject*, PyObject*, PyObject*)’:
    sklearn/cluster/_dbscan_inner.cpp:5969:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tmp_type = tstate->exc_type;
                            ^
    sklearn/cluster/_dbscan_inner.cpp:5970:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tmp_value = tstate->exc_value;
                             ^
    sklearn/cluster/_dbscan_inner.cpp:5971:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tmp_tb = tstate->exc_traceback;
                          ^
    sklearn/cluster/_dbscan_inner.cpp:5972:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tstate->exc_type = type;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:5973:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tstate->exc_value = value;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:5974:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tstate->exc_traceback = tb;
                 ^
    sklearn/cluster/_dbscan_inner.cpp: In function ‘int __Pyx__GetException(PyThreadState*, PyObject**, PyObject**, PyObject**)’:
    sklearn/cluster/_dbscan_inner.cpp:6029:24: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tmp_type = tstate->exc_type;
                            ^
    sklearn/cluster/_dbscan_inner.cpp:6030:25: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tmp_value = tstate->exc_value;
                             ^
    sklearn/cluster/_dbscan_inner.cpp:6031:22: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tmp_tb = tstate->exc_traceback;
                          ^
    sklearn/cluster/_dbscan_inner.cpp:6032:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_type’
         tstate->exc_type = local_type;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:6033:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_value’
         tstate->exc_value = local_value;
                 ^
    sklearn/cluster/_dbscan_inner.cpp:6034:13: error: ‘PyThreadState {aka struct _ts}’ has no member named ‘exc_traceback’
         tstate->exc_traceback = local_tb;
                 ^
    error: Command "g++ -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -I/home/ubuntu/.pyenv/versions/3.7.3/lib/python3.7/site-packages/numpy/core/include -I/home/ubuntu/.pyenv/versions/3.7.3/include/python3.7m -c sklearn/cluster/_dbscan_inner.cpp -o build/temp.linux-x86_64-3.7/sklearn/cluster/_dbscan_inner.o -MMD -MF build/temp.linux-x86_64-3.7/sklearn/cluster/_dbscan_inner.o.d" failed with exit status 1

It seems that it is the issue with old scikit-learn version: scikit-learn/scikit-learn#11378

Updating scikit-learn to 0.21.2 should fix the problem.
@yoptar
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yoptar commented Jun 29, 2019

There is a PR #861 that should be accepted before the next release

@sld
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sld commented Jun 29, 2019

Ok, thanks

@sld sld closed this as completed Jun 29, 2019
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