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fix: ParsrConverter fails on pages without text #3605

Merged
merged 3 commits into from
Nov 21, 2022
Merged

fix: ParsrConverter fails on pages without text #3605

merged 3 commits into from
Nov 21, 2022

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anakin87
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Proposed Changes:

Since #2932, the form feed character ("\f") is used to separate different pages.
In the ParsConverter, for each page, there is this check:

if text[-1] != "\f":
text += "\f"

that raises an error if len(text)==0. For example, we can have empty pages or pages where there is only a table.
I corrected this little bug.

How did you test it?

Manual test using this PDF.

Notes for the reviewer

I also have doubts about

docs = tables + [Document(content=text.strip(), meta=meta, id_hash_keys=id_hash_keys)]

If the first page is blank, "\f" is stripped and page numbers may become incorrect.
@bogdankostic WDYT?

Checklist

@anakin87 anakin87 requested a review from a team as a code owner November 18, 2022 15:59
@anakin87 anakin87 requested review from julian-risch and removed request for a team November 18, 2022 15:59
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@julian-risch julian-risch left a comment

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The change looks good to me and the PR is ready to be merged.
Sidenote: When I reviewed the PR, I also came across this line of code

while status_response.status_code == 200 and status_response.status_code != 201:

This could be simplified by having just

while status_response.status_code == 200

Maybe that's something for you @bogdankostic to check when you also have a look at

docs = tables + [Document(content=text.strip(), meta=meta, id_hash_keys=id_hash_keys)]
and empty documents, wrong page numbers?

@julian-risch julian-risch changed the title fix: ParsrConverter little bug fix: ParsrConverter fails on pages without text Nov 21, 2022
@julian-risch julian-risch merged commit 5f62494 into deepset-ai:main Nov 21, 2022
ZanSara added a commit that referenced this pull request Nov 28, 2022
* Fix docstrings for DocumentStores

* Fix docstrings for AnswerGenerator

* Fix docstrings for Connector

* Fix docstrings for DocumentClassifier

* Fix docstrings for LabelGenerator

* Fix docstrings for QueryClassifier

* Fix docstrings for Ranker

* Fix docstrings for Retriever and Summarizer

* Fix docstrings for Translator

* Fix docstrings for Pipelines

* Fix docstrings for Primitives

* Fix Python code block spacing

* Add line break before code block

* Fix code blocks

* fix: discard metadata fields if not set in Weaviate (#3578)

* fix weaviate bug in returning embeddings and setting empty meta fields

* review comment

* Update unstable version and openapi schema (#3584)

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>

* fix: Flatten `DocumentClassifier` output in `SQLDocumentStore`; remove `_sql_session_rollback` hack in tests (#3273)

* first draft

* fix

* fix

* move test to test_sql

* test: add test to check id_hash_keys is not ignored (#3577)

* refactor: Generate JSON schema when missing (#3533)

* removed unused script

* print info logs when generating openapi schema

* create json schema only when needed

* fix tests

* Remove leftover

Co-authored-by: ZanSara <sarazanzo94@gmail.com>

* move milvus tests to their own module (#3596)

* feat: store metadata using JSON in SQLDocumentStore (#3547)

* add warnings

* make the field cachable

* review comment

* Pin faiss-cpu as 1.7.3 seems to have problems (#3603)

* Update Haystack imports (#3599)

* Update Python version (#3602)

* fix: `ParsrConverter` fails on pages without text (#3605)

* try to fix bug

* remove print

* leftover

* refactor: update Squad data  (#3513)

* refractor the to_squad data class

* fix the validation label

* refractor the to_squad data class

* fix the validation label

* add the test for the to_label object function

* fix the tests for to_label_objects

* move all the test related to squad data to one file

* remove unused imports

* revert tiny_augmented.json

Co-authored-by: ZanSara <sarazanzo94@gmail.com>

* Url fixes (#3592)

* add 2 example scripts

* fixing faq script

* fixing some urls

* removing example scripts

* black reformatting

* add labeler to the repo (#3609)

* convert eval metrics to python float (#3612)

* feat: add support for `BM25Retriever` in `InMemoryDocumentStore` (#3561)

* very first draft

* implement query and query_batch

* add more bm25 parameters

* add rank_bm25 dependency

* fix mypy

* remove tokenizer callable parameter

* remove unused import

* only json serializable attributes

* try to fix: pylint too-many-public-methods / R0904

* bm25 attribute always present

* convert errors into warnings to make the tutorial 1 work

* add docstrings; tests

* try to make tests run

* better docstrings; revert not running tests

* some suggestions from review

* rename elasticsearch retriever as bm25 in tests; try to test memory_bm25

* exclude tests with filters

* change elasticsearch to bm25 retriever in test_summarizer

* add tests

* try to improve tests

* better type hint

* adapt test_table_text_retriever_embedding

* handle non-textual docs

* query only textual documents

* Incorporate Reviewer feedback

* refactor: replace `torch.no_grad` with `torch.inference_mode` (where possible) (#3601)

* try to replace torch.no_grad

* revert erroneous change

* revert other module breaking

* revert training/base

* Fix docstrings for DocumentStores

* Fix docstrings for AnswerGenerator

* Fix docstrings for Connector

* Fix docstrings for DocumentClassifier

* Fix docstrings for LabelGenerator

* Fix docstrings for QueryClassifier

* Fix docstrings for Ranker

* Fix docstrings for Retriever and Summarizer

* Fix docstrings for Translator

* Fix docstrings for Pipelines

* Fix docstrings for Primitives

* Fix Python code block spacing

* Add line break before code block

* Fix code blocks

* Incorporate Reviewer feedback

Co-authored-by: Massimiliano Pippi <mpippi@gmail.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Stefano Fiorucci <44616784+anakin87@users.noreply.github.com>
Co-authored-by: Julian Risch <julian.risch@deepset.ai>
Co-authored-by: ZanSara <sarazanzo94@gmail.com>
Co-authored-by: Espoir Murhabazi <espoir.mur@gmail.com>
Co-authored-by: Tuana Celik <tuana.celik@deepset.ai>
Co-authored-by: tstadel <60758086+tstadel@users.noreply.github.com>
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ParsrConverter invalid if statement
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