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from deeptime.markov import TransitionCountEstimator from deeptime.markov.msm import BayesianMSM counts_estimator = TransitionCountEstimator(lagtime=LAGtime, count_mode='effective') counts = counts_estimator.fit_fetch(dtrajs).submodel_largest() b_msm_estimator = BayesianMSM() b_msm = b_msm_estimator.fit_fetch(counts) from deeptime.markov import pcca nstates = 4 Bayesian_pcca = pcca(b_msm.prior.transition_matrix, nstates) print(b_msm.prior.mfpt(Bayesian_pcca.sets[0],Bayesian_pcca.sets[1])) >>283.0460513163462 print(b_msm.evaluate_samples('mfpt',A=[0],B=[1]).mean()) >>768.3398675145543
Please help me to see what is wrong thanks.
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Please help me to see what is wrong thanks.
The text was updated successfully, but these errors were encountered: