Try to fix travis

deeptools · Oct 30, 2017 · 6b475fa · 6b475fa
1 parent bc03450
commit 6b475fa
Showing 1 changed file with 26 additions and 26 deletions.
diff --git a/.travis.yml b/.travis.yml
@@ -31,31 +31,31 @@ jobs:
         - conda install --yes python=2.7 flake8
       script:
         - if [[ "$LINT" == "1" ]]; then flake8 . --exclude=.venv,.build,planemo_test_env,build --ignore=E501,F403,E402,F999,F405,E712 ; fi
-    - stage: test
-      # Setup anaconda
-      before_install:
-        - export HIC_TEST_DATA_DIR="`pwd`/hicexplorer/test/test_data/"
-        - echo $HIC_TEST_DATA_DIR
-        - curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -o miniconda.sh
-        # - if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "3.5" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh ; fi
-        # - if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "3.6" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh ; fi
-        - bash miniconda.sh -b -p $HOME/miniconda
-        - PATH_WITHOUT_CONDA="$PATH"
-        - export PATH="$HOME/miniconda/bin:$PATH"
-        - hash -r
-        - conda config --set always_yes yes --set changeps1 no
-        - conda update -q conda
-        # Useful for debugging any issues with conda
-        - conda info -a
+
+# Setup anaconda
+before_install:
+  - export HIC_TEST_DATA_DIR="`pwd`/hicexplorer/test/test_data/"
+  - echo $HIC_TEST_DATA_DIR
+  - if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then curl https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -o miniconda.sh ; fi
+  - if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "3.5" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh ; fi
+  - if [[ "$TRAVIS_OS_NAME" == "linux" && "$TRAVIS_PYTHON_VERSION" == "3.6" ]]; then curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -o miniconda.sh ; fi
+  - bash miniconda.sh -b -p $HOME/miniconda
+  - PATH_WITHOUT_CONDA="$PATH"
+  - export PATH="$HOME/miniconda/bin:$PATH"
+  - hash -r
+  - conda config --set always_yes yes --set changeps1 no
+  - conda update -q conda
+  # Useful for debugging any issues with conda
+  - conda info -a
 
-      # Install packages
-      install:
-        - conda create --name hicexplorer_pytest --yes python=$TRAVIS_PYTHON_VERSION pytest
-        - source activate hicexplorer_pytest
-        - conda install --yes -c defaults -c conda-forge -c bioconda --file requirements.txt
-        - conda install --yes -c defaults -c conda-forge -c bioconda configparser
-        - python setup.py install
+# Install packages
+install:
+  - conda create --name hicexplorer_pytest --yes python=$TRAVIS_PYTHON_VERSION pytest
+  - source activate hicexplorer_pytest
+  - conda install --yes -c defaults -c conda-forge -c bioconda --file requirements.txt
+  - conda install --yes -c defaults -c conda-forge -c bioconda configparser
+  - python setup.py install
 
-      # command to run tests
-      script:
-        - py.test hicexplorer --doctest-modules
+# command to run tests
+script:
+  - py.test hicexplorer --doctest-modules